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3 protocols using sc 7298

1

Western Blot Analysis of OXPHOS Proteins

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Antibodies anti‐COX4, anti‐UQCRC2, anti‐NDUFA9, anti‐ATP5A, anti‐SDHA were from Abcam (OXPHOS cocktail ab110412, dilution 1:2,000); anti‐SDHB (ab14714, dilution 1:200) and anti‐COX1 (ab14705, dilution 1:2,000) were from Abcam; anti‐HSC70 was from Santa Cruz (sc‐7298, dilution 1:1,000); anti‐GAPDH was from Abcam (ab8245, dilution 1:40,000); anti‐P62 was from Abnova (H00008878‐M01, dilution 1:1,000); anti‐LC3‐I/II was from Novus Biologicals (NB100‐2220, dilution 1:1,000); anti‐LAMP1 was from Cell Signaling (3243, dilution 1:1,000); anti‐PINK1 was from Novus (BC100‐494, dilution 1:1,000); and anti‐Parkin was from Abcam (ab77924, dilution 1:500).
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2

Western Blot Analysis of Protein Expression

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Cells were lysed in ice cold RIPA buffer (G-Biosciences, 786–490) supplemented with protease inhibitor cocktail (Roche, 11836153001). Samples were denatured, separated by SDS-PAGE with 4–12% Bis-tris gels (Sigma), and transferred to low fluorescence PVDF membranes with the Trans-Blot Turbo Transfer System according to manufacturer’s instructions (Bio-Rad, RRID:SCR_023156). Membranes were blocked for one hour with Intercept Blocking Buffer (LI-COR, 927–7000) and probed overnight at 4°C with the following primary antibodies diluted in blocking buffer containing 0.2% Tween-20: Puromycin (1:10000, Millipore MABE343, RRID:AB_2566826), APOE (1:1000, GeneTex GTX100053, RRID:AB_1949674), HSC70 (1:1000, Santa Cruz sc-7298, RRID:AB_627761), LRP1 (1:50000, abcam 92544, RRID:AB_2234877). Membranes were washed with PBST and incubated for an hour with IRDye 680RD goat anti-mouse (LI-COR 926–68070, RRID:AB_10956588) or 800CW goat anti-rabbit (LI-COR 926–32211, RRID:AB_621843) secondary antibodies diluted in blocking buffer containing 0.2% Tween 20 and 0.1% SDS (1:5000). Blots were imaged with a LI-COR Odyssey M Imager and analyzed with Image Studio Lite (RRID:SCR_013715) and Empiria Studio (RRID:SCR_022512) software.
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3

Western Blot Analysis of Nuclear Proteins

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Proteins were separated by SDS-PAGE on 4%-20% polyacrylamide gradient gels and transferred to 0.45-mm nitrocellulose membranes (Whatman Protran). The membranes were incubated with the appropriate primary and secondary antibodies and washed with TBS-Tween 20. Horseradish-peroxidase-conjugated secondary antibodies were detected by SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific PI-34080). Antibodies used were anti-SAP155 (MBL; D221-3), anti-H3 (Abcam; ab1791), anti-H2B (Abcam; ab1790), anti-SF3B4 (Abcam; ab11803), anti-SF3B3 (Proteintech; 14577), anti-SF3A1 (Proteintech; 15858), anti-SNRPA1 (Proteintech; 17368), anti-SNRPA (Santa Cruz; sc-376027), anti HSC-70 (Santa Cruz; sc-7298), donkey anti-rabbit (Abcam; ab97064), and goat anti-mouse immunoglobulin G (Abcam; ab7068).
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