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8 protocols using 800cw goat anti rabbit igg

1

Quantification of Synaptic Protein Levels

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1 cm uninjured spinal cord sample were dissected and collected from WT and SCID mice as described in qRT-PCR segment. Such tissue samples were homogenized in 500 μL RIPA buffer (Beyptime, P0013K) with 1 mmol/L phenylmethanesulfonyl fluoride (PMSF) and a mixture of protease inhibitor cocktail. After 10 min incubation in ice, they were then centrifuged at 12,000 rpm for 30 min at 4 °C and quantitated using a BCA quantification kit. 25 μg protein of each sample was loaded on 10% acrylamide gels. The antibodies used for western blotting were rabbit anti-VAMP1 antibody (Abcam), rabbit anti-SNAP25 (SYSY), rabbit anti-RAB3A antibody (Abcam), rabbit anti-STMN2 antibody (Abcam), mouse anti- β-Actin antibody (CST), 800CW goat-anti-rabbit IgG (LI-COR), 680LT goat-anti-mouse IgG (LI-COR). Western blots were imaged using Odyssey Imaging System (LI-COR Biosciences).
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2

Western Blot Analysis of Protein Expression

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Total protein was extracted with RIPA buffer (Pierce, no. 89900) supplemented with protease inhibitor (Life Technologies, no. 1861280) and quantified using the BCA Protein Assay (ThermoFisher Scientific). Proteins were separated on Bolt 4-12% Bis-Tris Plus gels (Life Technologies, no. NW04120) and transferred to polyvinylidene difluoride membranes. Membranes were probed with antibodies against GCLC (Proteintech, no. 12601-1-AP, 1:2000 dilution), HuR (Santa Cruz Biotechnology, no. SC-5261, clone 3A2, 1:2000 dilution)21 (link),55 (link)–60 (link), Lamin A/C (Cell Signaling, no. 4777, 1:2000 dilution), α-Tubulin (Proteintech, no. 11224-1-AP, 1:4000 dilution), and β-Actin (Santa Cruz Biotechnology, no. SC-47778, 1:4000 dilution). Blots were probed with secondary antibodies customized for the Odyssey Imaging system Secondary antibodies (680RD Goat anti-Mouse IgG (Li-COR, no. 926-68070, 1:20000 dilution) and 800CW Goat anti-Rabbit IgG (Li-COR, no. 926-32211, 1:10000 dilution). The density of blots was quantified using Image Studio Software v.5.2.5.
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3

Lipid Nanoparticle Characterization

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2 µL solution containing LNPcor or corresponding control samples was spotted to Nitrocellulose membranes (#LC2001, Thermo Fisher Scientific). Membranes were blocked with Intercept (TBS) blocking buffer (LI-COR) for 30 min at RT and incubated with primary antibodies Cy5 (#ab52061, Abcam), PEG (#ab51257, Abcam), Apo AII (#ab92478, Abcam), Apo CII (#ab230447, Abcam), Apo CIII (#ab76305, Abcam) and ApoE (#ab183597, Abcam) where appropriate, diluted 1:1000 in blocking buffer at for 30 min at RT. Membranes were washed three times with 0.1% TBS-Tween and incubated for 30 min at RT with IRDye 680RD Goat anti-Mouse IgG (#926-68070, LI-COR Biotechnology) and 800CW goat anti-rabbit IgG (#926-32211, LI-COR Biotechnology) diluted 1:2000 in 0.1% TBS-Tween. Following three washes, membranes were visualized with the Odyssey CLx imaging system and processed in Image Studio (v4.0, LI-COR).
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4

Western Blot Analysis of Phospho-Akt

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In brief, after the cells were harvested, they were lysed by RIPA buffer containing protease inhibitors and phosphatase inhibitors. Protein concentrations were quantified with BCA Protein Assay Kit (Thermo Scientific, USA). Cell lysates were resolved on 10% SDS-PAGE and then transferred to a PVDF (Millipore, USA). The blots were incubated with phospho-Akt rabbit mAb (Cell Signaling Technology), and GAPDH (Proteintech, USA). The secondary antibodies were 800CW goat anti-rabbit IgG (LI-COR, USA). After incubation with secondary antibodies, the membranes were visualized using ECL chemiluminescence (Thermo Scientific, USA).
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5

Biotin-labeling Assay for Cell Surface Proteins

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To determine the level of proteins at the cell surface we used a biotin-labeling protein assay (EZ-Link™ Sulfo-NHS-SS-Biotin [cat: 21331], Thermo Scientific, Rockford, IL, USA) as was previously described [20 (link)]. After stimulus, cells were incubated with a 0.12 mg/mL of biotin solution for 2 h at 4 °C, and then with 0.1 mM glycine solution for 30 min. The biotinylated proteins were pulled down using streptavidin-conjugated agarose beads (Pierce™ Streptavidin Agarose [cat: 20353], Thermo Scientific) for 2 h at room temperature. The biotinylated-plasma membrane proteins were eluted, then treated for Western blot and the nitrocellulose membranes were incubated with primary antibodies overnight at 4 °C and secondary antibodies were raised in goat anti-mouse IgG 680CW and goat anti-rabbit IgG 800CW (LI-COR) diluted 1/10,000 for 1 h at room temperature. The specific bands were developed using Odyssey CLx fluorescence imaging system (LI-COR) and were quantified by densitometric analysis using Image Studio Software (LI-COR). As the loading control of PM protein, total protein biotinylated-ATP1A1 and β-actin were used, respectively. Each biotinylated protein in the PM was related to biotinylated-ATP1A1 protein.
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6

Antibody Characterization for Extracellular Vesicles

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Antibodies against human lactadherin (monoclonal sc-8029), CD63 (sc-5275 or ab68418), TSG101 (sc-7964), calnexin (sc-46669), GAPDH (sc-47724) and β-actin (sc-47778) were purchased from Santa Cruz Biotechnology, Inc. or Abcam. A policlonal antibody against lactadherin was also used (AF2767-SP) and purchased from RyD Systems. Antibody against human flotillin 1 (18634S) was purchased from Cell Signaling Technology (Danvers, MA). Alexa Fluor 488-conjugated anti-lactadherin antibody (sc-8029) was also purchased from Santa Cruz Biotechnology Inc. Anti-rabbit IgG-HRP (7074S) and anti-mouse IgG-HRP (7076S) secondary antibodies were purchased from Cell Signaling Technology. Goat anti-rabbit IgG-800CW (#92,532,211) and goat anti-mouse IgG-680LT (#925–68,020) secondary antibodies were obtained from Licor.
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7

Quantifying GLUT4 Translocation to Plasma Membrane

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The procedure was followed, as previously described [37 (link)]. Briefly, after different stimulus cells were rinsed with cold PBS 1X, fixed with 4% (v/v) PFA, washed with 0.1 mM glycine, and blocked with 5% (v/v) horse serum for 30 min on ice. Cells were incubated with anti-GLUT4 (1/1000) and anti-ATP1A1 (1/2000) for 1 h on ice, followed by incubation with goat anti-rabbit IgG 800CW and goat anti-mouse IgG 680CW (LI-COR) secondary antibodies (1/10,000) for 1 h on ice. Fluorescence intensity was measured using the Odyssey CLx fluorescence imaging system (LI-COR) and quantified by densitometry using Image Studio Software (LI-COR). The content of GLUT4 in the PM was related to ATP1A1 protein. For other experiments, before stimulus, cells were pre-incubated for 30 min with 40 µM wortmannin or PD98059.
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8

Western Blot Analysis of Protein Expression

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Cell protein extracts were prepared using RIPA lysis buffer (50 mM Tris–HCl pH 8.0, 150 mM NaCl, 1% Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS, 1 mM PMSF, 10 mM sodium ortho-vanadate, and protease inhibitor cocktails (Sigma-Aldrich, St. Louis, MO, USA)). Forty micrograms of protein extracts were separated by electrophoresis on 10% SDS-polyacrylamide gels [61 (link)] and transferred to a nitrocellulose membrane [62 (link)] (GE Healthcare Life Science, Amsterdam, The Netherlands). Nonspecific binding was blocked with 5% non-fat dry milk in a Tris-HCl-0.01% Tween 20 (TBS-T) buffer for 60 min at room temperature. The nitrocellulose membranes were incubated overnight at 4 °C with primary antibodies, and secondary antibodies raised in goat anti-mouse IgG 680CW and goat anti-rabbit IgG 800CW (LI-COR Biosciences, Lincoln, NE, USA) diluted 1/10,000 for 1 h at room temperature. The specific bands were developed using Odyssey CLx near-infrared fluorescence imaging system (LI-COR) and were quantified by densitometric analysis using Image Studio Software (LI-COR).
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