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5 protocols using l1cam

1

Comprehensive Immunohistochemical Profiling

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Immunohistochemical (IHC) analysis was performed using standard protocols on an automated Ventana Benchmark XT immunostaining system (Roche‐Ventana, Darmstadt, Germany). We used primary antibodies against glial fibrillary acidic protein (GFAP; rabbit polyclonal, Agilent/Dako, Glostrup, Denmark), microtubule‐associated protein 2 (Map2; mouse monoclonal (HM‐2), Sigma‐Aldrich, St. Louis, MO, USA), p53 protein (mouse monoclonal (DO‐7), Agilent/Dako, Glostrup, Denmark), Olig‐2 (goat polyclonal, R&D Systems, Abingdon, UK), epithelial membrane antigen (mouse monoclonal (E‐29), Agilent/Dako, Glostrup, Denmark), p65 RelA (rabbit monoclonal (D14E12), Cell signaling, Danvers, U.S.A.), L1CAM (mouse monoclonal, (UJ127.11), Sigma–Aldrich, St Louis, MO, USA), Claudin‐1 (mouse monoclonal (ab56417), Abcam, Cambridge, UK), Ki67 (mouse monoclonal (Ki‐67P), Dianova, Hamburg, Germany), phospho‐histone‐3 (rabbit polyclonal, Bioclare Medical, Hague, Netherlands) and NF (mouse monoclonal (2F11), Agilent/Dako).
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2

Western Blot Protein Analysis Protocol

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Cultured cells were solubilized in sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis sample buffer, and the protein concentration in each sample was determined using a Bio-Rad protein assay kit (Bio-Rad, Hercules, CA) with bovine serum albumin as the standard. Proteins (30 µg of protein per lane) were then resolved in a 7.5%–10% SDS polyacrylamide gel and electrophoretically transferred to a nitrocellulose membrane. Membranes were blocked with 4% nonfat milk in TBST (Tris-HCl based buffer with 0.2% Tween 20, pH 7.5) and then incubated in the presence of primary antibody overnight at 4 °C. Cells were then incubated for 1 hour in the presence of a 1:5,000 dilution of secondary antibody conjugated to horseradish peroxidase (Jackson Immunoresearch Laboratory, West Grove, PA). Reaction product was visualized using an enhanced chemiluminescence Western blot detection kit (Amersham Bioscience, Piscataway, NJ). The primary antibodies used were: a mouse monoclonal antibody against TRF2 (Imgenex); a goat polyclonal antibody against REST (P18, Santa Cruz); and antibodies against Olig2 (Millipore), p53 (Cell Signaling), β3-tubulin (Sigma), L1CAM and actin (Sigma).
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3

Analyzing NF-kB Signaling in 293T Cells

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Protein was extracted from 293T cells in RIPA buffer at 48 hours after transfection, resolved by SDS-PAGE, and immunoblotted following standard biochemical techniques. Primary antibodies used were phospho-NF-kB p65 Ser536 (Cell Signaling, clone 7F1), total NF-kB p65 (Cell Signaling, clone D14E12), L1CAM (Sigma, clone UJ127.11), and β-actin (Sigma, clone AC-15).
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4

Analyzing NF-kB Signaling in 293T Cells

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Protein was extracted from 293T cells in RIPA buffer at 48 hours after transfection, resolved by SDS-PAGE, and immunoblotted following standard biochemical techniques. Primary antibodies used were phospho-NF-kB p65 Ser536 (Cell Signaling, clone 7F1), total NF-kB p65 (Cell Signaling, clone D14E12), L1CAM (Sigma, clone UJ127.11), and β-actin (Sigma, clone AC-15).
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5

Immunohistochemical Evaluation of Tumor Markers

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Hematoxylin-and eosin-stained sections of formalin-fixed, paraffin-embedded tissue were evaluated using routine light microscopy. Immunohistochemistry was performed on 5 μm paraffin sections following routine heat antigen retrieval (10 mM sodium citrate buffer, pH 6.0). Nuclei were counterstained with hematoxylin. The primary antibodies used were cyclin D1 (1:250 dilution, clone SP4, Thermo Fisher Scientific, Waltham, MA), p65 (1:5000 dilution, clone D14E12, Cell Signaling, Danvers, MA), and L1CAM (1:2000 dilution, clone UJ127.11, Sigma, St. Louis, MO). For cyclin D1 and p65, positivity was defined as at least intermediate nuclear immunoreactivity in at least 50% of tumor cells to reduce false-positive cases secondary to nonspecific staining. L1CAM positivity was defined as intermediate or greater membranous immunoreactivity in >5% of tumor cells. Fisher's exact test was used to make comparisons of immunohistochemical staining between groups. p values <0.05 were considered statistically significant. Percentages were rounded to the nearest integer.
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