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10 protocols using polyclonal anti actin

1

Western Blot Analysis of Cellular Proteins

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Anti-LATS2, CCND1, REST, SPAG6, PTEN, FZD1 and GAPDH rabbit polyclonal (Abcam, Cambridge, UK) and anti-actin polyclonal (Santa Cruz Biotechnology) antibodies were used at 1:1,000 dilution for western blotting. Anti-rabbit polyclonal secondary horseradish-peroxidase-conjugated antibodies (Dako, Glostrup, Denmark) was used for detection (diluted; 1:2,000). Paclitaxel (TX) was purchased from Sigma (St. Louis, MO). The working stock was diluted in the media at a final concentration of 4μM and further diluted when needed.
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2

Molecular Characterization of HCC Cells

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Anti-PTEN, PLK1, laminB, GAPDH rabbit polyclonal (Abcam, Cambridge, UK), and anti-actin polyclonal (Santa Cruz Biotechnology) antibodies were used at a dilution of 1:1000 for western blotting. Anti-rabbit polyclonal secondary horseradish peroxidase-conjugated antibodies were used for detection (diluted 1:2000). Paclitaxel was purchased from Sigma (St. Louis, MO, USA). The working stock was diluted in the media at a final concentration of 4 μM and further diluted when needed. The human HCC cancer cells (H22 HHCC and HepG2 cells) were obtained from the American Type Culture Collection (Manassas, VA, USA). These cells were cultured in Dulbecco’s modified Eagle’s medium plus 10% fetal bovine serum at 5% CO2 and 37 °C.
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3

Ovarian Cancer Cell Protein Analysis

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Anti-LATS2, YAP1, lamin-B, PPD-L1, GAPDH rabbit polyclonal (Abcam, Cambridge, United Kingdom), and anti-actin polyclonal (Santa Cruz Biotechnology) antibodies were used at 1:1,000 dilution for Western blotting. Anti-rabbit polyclonal secondary horseradish peroxidase-conjugated antibodies were used for detection (diluted; 1:2,000). Paclitaxel (TX) was purchased from Sigma (St. Louis, MO). The working stock was diluted in the media at a final concentration of 4μM and further diluted when needed. The human ovarian serous cancer cell line, MCF7 cells were obtained from ATCC (Manassas, VA, United States). These cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) plus 10% fetal bovine serum (FBS) at 5% CO2 and 37°C.
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4

Breast Cancer Cell Line Protein Analysis

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Anti-LATS2, YAP1, laminB, PPD-L1, and GAPDH rabbit polyclonal (Abcam, Cambridge, UK) and anti-actin polyclonal (Santa Cruz Biotechnology) antibodies were used at 1:1,000 dilution for western blotting. Antirabbit polyclonal secondary horseradish peroxidase-conjugated antibodies was used for detection (diluted; 1:2,000). Paclitaxel (TX) was purchased from Sigma (St. Louis, MO). The working stock was diluted in the media at a nal concentration of 4 µM and further diluted when needed. The human breast cancer cell line, MCF7 cells were obtained from ATCC (Manassas, VA, USA), These cells were cultured in Dulbecco's modi ed Eagle's medium (DMEM) plus 10% fetal bovine serum (FBS) at 5% CO2 and 37 °C.
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5

Immunofluorescence Analysis of Cell-Cell Junctions

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Monoclonal antibodies against Snail-1, ERK1/2, phospho-ERK1/2, phospho-SMAD1-5-8, and Cav1 were from Cell Signaling Technology; monoclonal antibodies against E-cadherin, β-catenin, and γ-catenin were from BD (Becton-Dickinson Laboratories, Mountain View, CA); monoclonal antibodies against occludin was from Invitrogen (Carlsbad, CA); monoclonal antibodies against tubulin, α-SMA, α-catenin, vimentin, pan-cytokeratin, and fibronectin were from Sigma (Saint Louis, MO); monoclonal anti-N-cadherin and polyclonal anti-ZO-1 were from Zymed (Invitrogen, Carlsbad, CA); polyclonal anti-actin, -SMAD2-3, and -phospho-MEK were from Santa Cruz Biotechnology (CA); and polyclonal anti-phospho SMAD2-3 was from Biosource (Camarillo, CA). Monoclonal anti-CD54 was from Biolegend (San Diego, CA); polyclonal anti-Fsp1 was from Dako (Glostrup, Denmark); monoclonal anti-CD31 from Serotec (Oxford, UK); and polyclonal anti-Ki67 from Abcam (Cambridge, UK). Monoclonal anti-JAM-A clone BV-11 was a gift from Dr. E. Dejana (Milan Italy). Fluor 647?phalloidin and Hoechst 33342 were from Invitrogen (Carlsbad, CA). CI 1040 was from Selleck (Houston, TX).
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6

Antibody Sources for Membrane Protein Analysis

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Antibodies used in the study were from the following sources: monoclonal anti-NHE1 and monoclonal anti-α1 subunit of the Na/K-ATPase (Millipore, Billerica, MA), polyclonal anti-actin (Santa Cruz Biotechnology, Santa Cruz, CA). Polyclonal rabbit anti-NaPi-IIa, anti-NaPi-IIb, anti-NaPi-IIc, anti-Pit-1 and anti-Pit-2 were characterized and validated previously [16 (link)–18 (link)]. Immunoblotting was performed as described [36 (link)].
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7

Antibody Analysis of Cell Signaling

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The following primary antibodies were used: Polyclonal rabbit anti-NaPi-IIa 1:2,000, obtained from Prof. Biber J (University of Zurich)58 (link). Polyclonal anti-actin (Santa Cruz Biotechnology, Santa Cruz, CA, 1:5000). FGFR1 mAb 9740: Cell Signaling (1:1000). Klotho MAb KM2076: Vendor Transgenics (1:2000). Secondary antibodies used were peroxidase-conjugated (Sigma-Aldrich, St. Louis, MO, USA; 1:20000).
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8

Evaluating Endothelial Cell Barrier Proteins

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The culture medium for the cells has been previously described [11 (link)]. Polyclonal anti-claudin-5 and anti-occludin antibodies were purchased from Zymed (San Francisco, CA, U.S.A). Polyclonal anti-actin, anti-beta tubulin, anti-p65 subunit of NFκB antibodies, monoclonal anti-intercellular adhesion molecule-1 (ICAM-1) and anti-melanoma cell-adhesion molecule (MelCAM) antibodies were obtained from Santa Cruz (Santa Cruz, CA, U.S.A). Polyclonal anti-vascular cell adhesion molecule-1 (VCAM-1) antibodies were purchased from R&D systems (Minneapolis, MN, U.S.A). Fingolimod and Fingolimod-phosphate were provided by Mitsubishi Tanabe Pharma (Osaka, Japan).
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9

Quantitative Protein Analysis of Hypoxia Response

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Total protein extraction was carried out by homogenizing 106 cells in 200 µL lysis buffer (10 mmoL/L Tris (pH 7.5), 5 mmoL/L MgCl2, 10 mmoL/L NaCl, 0.5% NP-40, protease and phosphatase inhibitors, Sigma); 20 μg of total proteins were resolved by SDS-PAGE according to standard methods. Proteins were detected with anti-HIF-1α (1/500e; BD Biosciences, Allschwill, Switzerland), anti-HIF-2α (1/500; Abcam), polyclonal anti-α/β-tubulin (1/2000; Cell Signaling, Leiden, The Netherlands), polyclonal anti-actin (1/20000; Santa Cruz Biotech, Heidelberg, Germany), anti-S6 ribosomal protein (1/1000; Cell Signaling) and anti-phospho-S6 ribosomal protein (1/1000; Cell Signaling, Leiden, The Netherlands).
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10

Immunoblotting Analysis of Apoptosis Regulators

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Immunoblotting was performed essentially as described [70 (link)]. Cell lysates were separated under reducing conditions on 15% SDS-polyacrylamide gels and electroblotted to a polyvinylidene difluoride membrane. After 1 h of blocking in 5% non-fat dry milk powder in TBST, membranes were incubated with primary antibodies overnight at 4°C. Polyclonal anti-actin, polyclonal anti-BCL-XL, and monoclonal anti-NOXA antibodies were from Santa Cruz (Santa Cruz Biotechnology, Dallas, TX, USA). Polyclonal anti-BAX was purchased from Merck-Millipore (Darmstadt, Germany), monoclonal anti-BIM from Enzo Life Sciences, monoclonal anti-MCL-1 from Cell Signaling (Danvers, MA, USA), and polyclonal anti-PUMA antibody from Abcam (Cambridge, UK).
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