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42 protocols using anti f4 80 antibody

1

Histological Analyses of Mouse Kidney

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Histological analyses were performed as described previously54 (link),55 (link). Briefly, mouse kidneys were fixed in 4% paraformaldehyde in PBS, incubated overnight at 4 °C, and embedded in paraffin. Sections (4 μm thick) were stained with periodic acid–Schiff (PAS) and PSR. The glomerular area was measured by tracing the outline of the glomerular tuft of at least 50 glomeruli in the cortical fields of PAS-stained specimens. Fibrotic areas were measured digitally using a fluorescence microscope (BZ‐X800; Keyence, Osaka, Japan) in the cortical fields of PSR-stained specimens. Immunohistochemistry was performed as described previously56 (link). Sections were incubated with anti‐F4/80 antibodies (1:100; ab111101; Abcam, Cambridge, MA, USA). The TUNEL assay was conducted using an in situ apoptosis detection kit (MK-500; Takara Biomedicals, Tokyo, Japan). Interstitial TUNEL-positive cells were counted in 10 randomly selected cortical fields (magnification: × 200). All measurements were blinded.
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2

Antibody Validation for Protein Analysis

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Anti- HNF4α antibodies were from Novus. Anti-F4/80 antibodies were from Abcam. Anti-β-actin antibodies were from Santa Cruz.
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3

Immunohistochemical Staining of F4/80 Macrophages

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Samples were blocked using 10% normal goat serum for 30 min at 37 °C and incubated overnight at 4 °C with anti-F4/80 antibodies (Abcam, Cat No. ab100790). The slices were then incubated with the horseradish peroxidase-conjugated secondary antibody for 1 h at room temperature, and DAB chromogenic reagent was added until the nucleus showed a brown‒yellow color under a microscope. Samples were then counterstained with hematoxylin staining solution to label the nucleus, washed and mounted onto glass slides with a resin mounting medium. Images were processed and analyzed with ImageJ software.
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4

Histological Evaluation of Cardiac Inflammation

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Specimens were stained with hematoxylin and eosin (H&E) and Masson’s trichrome, and immunostained for F4/80 or alpha smooth muscle actin (αSMA), as previously reported [15 (link), 16 ]. In brief, heart samples were harvested from PBS- or talc-injected mice and fixed with 4% paraformaldehyde overnight. Tissues were then embedded in paraffin and sectioned into 10 μm slices along the cephalocaudal axis. For avidin-biotin complex (ABC) immunostaining, sections were incubated with anti-F4/80 antibody (1/100 dilution; Clone# A3–1, Abcam, Cambridge, MA) or anti-αSMA antibody (1/100 dilution; Clone# SPM332, Novus Biologicals, Littleton, CO, USA) overnight, followed by horseradish peroxidase-labelled secondary antibody (Nichirei Bioscience, Tokyo, Japan) for 1 h. Visualization of F4/80 and αSMA was achieved via 3,3′-diaminobenzidine tetrahydrochloride (DAB) reaction. Images were taken using a microscope (Olympus, Tokyo, Japan).
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5

Adipose Tissue Macrophage Imaging

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6-wk-old C3(1)-TAg mice were fed an LFD or HFD for 6 wk. Mammary adipose tissue was isolated at 12 wk of age, a time point that coincides with DCIS (Holzer et al., 2003 (link)). Adipose tissue was sectioned (5 µm), stained with anti-F4/80 antibody (Abcam) to visualize ATMs, and counterstained with hematoxylin. Images were acquired with a Nikon Eclipse Ti2 microscope with the following setting: brightfield, objective magnification 20 and objective numerical aperture 0.45, room temperature, Color Camera Nikon DS-Ri2, and NIS-Element Version 5.02 software.
Mammary and visceral fat was obtained from WT and mNox2−/− mice fed a LFD or HFD for 10 wk. Adipose tissue was sectioned (5 µm) and stained with antibodies against MAC2 (Cedarlane) and PLIN2 (Abcam). Fluorescence images were acquired with a Nikon Eclipse Ti2 microscope with the following setting: objective magnification 20, objective numerical aperture 0.45, room temperature, emission wavelength of DAPI (457.5 nm), GFP (535.0 nm), and RFP (610 nm), Camera Nikon DS-Qi2, and NIS-Element Version 5.02 software.
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6

Phenotyping Macrophage Subtypes in Tissues

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The dewaxed tissue sections were alternately placed in citric acid buffer and heated to boiling point for antigen repair for 20 min, and then returned to room temperature. The cells were permeated with PBS which contained 0.3% Triton X-100 for 20 min. These slices were closed with 3% Donkey serum and incubated in an incubator for 30 min. The specific fluorescent antibody was incubated overnight at 4°C and the fluorescent secondary antibody was incubated for 1 h. Primary antibodies anti-F4/80 antibody (1/100, abcam), anti-iNOS antibody (NOS2) (1/100, abcam), and anti-CD206 (MMR) monoclonal antibody (MR6F3)-PE (1/50, invitrogen) were utilized. For anti-F4/80, anti-iNOS and anti-CD206 staining, donkey anti-rabbit (1/500, Alexa 488,abcam), goat anti-rabbit (1/500, Alexa 647,Invitrogen), and donkey anti-goat (Alexa Fluor®555) secondary antibodies were used. After antibody incubation, anti-fluorescence quenching sealing tablets (including DAPI) were added to seal the tablets. Images were collected and analyzed by laser confocal microscopy system (TCS SP8 X, Leica). Immunofluorescent antibody markers were matched with protocols provided in the relevant literature (Yu et al., 2016 (link)). F4/80+CD206iNOS+ cells were M1-type macrophages, and F4/80+CD206+ iNOS-cells were defined as M2-type macrophages.
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Immunohistochemical Analysis of Macrophages in Atherosclerotic Lesions

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Macrophage contents in atherosclerotic lesion were measured using immunohistochemistry staining. Briefly, aortic sinus sections were incubated with 3% H2O2 for 10 min and blocked with 3% BSA (Sigma) for 1 h and incubated with anti-F4/80 antibody (1:200, Abcam, Inc., CA, USA; Cat. No.ab-300421) overnight at 4 °C. After incubating with anti-rabbit lgG for 1 h at room temperature, slides were developed with 3,3′-diaminobenzidine (DAB Quanto Kit, TA-060-QHDX, ThermoFisher) and stained with heamatoxylin. Images were recorded using a light microscope.
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8

Quantification of Liver Inflammation

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We analyzed all tissue samples from in vivo experiments. Four μm-thick tissue sections from paraffin-embedded blocks were stained with hematoxylin and eosin (H&E). For immunohistochemistry, tissue sections were incubated in 0.01M citrate buffer (pH 6.0) at 90°C for 60 min, followed by blocking with normal rabbit serum (1:75, Abcam, Cambridge, UK) for 20 min. Subsequently, tissue sections were incubated with anti-F4/80 antibody (1:100, Abcam) and anti-Gr1 antibody (1:200, Abcam) for 2 h. Tissue sections were then incubated with biotinylated anti-rabbit IgE and avidin–biotin horse radish peroxidase complex (Vector Laboratories, Burlingame, CA, USA) for 2 h and stained with DAB (Invitrogen, Eugene, OR, USA) for 20 min. Stained tissues were visually inspected using a model Olympus BX51 microscope (Olympus, Tokyo, Japan) equipped with a CCD camera and computer-assisted image analysis with DP2-BSW (Olympus, Tokyo, Japan). The numbers of inflammatory foci, F4/80+ cells, and Gr1+ cells were counted in two liver sections of each mouse or 10 hepatocytes.
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9

Intestinal Histology and Mucosal Analysis

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Intestinal sections 1 cm in length were collected from the ileum and colon of mice and immediately placed in 10% buffered formalin overnight at room temperature. Paraffin-embedded tissues were cut into 5 μm slices and stained with hematoxylin and eosin (H&E) using standard techniques. H&E-stained tissues were visualized under a light microscope, and villous length and crypt depth of each villous and crypt of the tissue were enumerated using microscopy software and ImageJ. For visualizing the mucus sugars, paraffin-embedded tissues were cut into 5 μm slices and stained with Alcan blue-periodic acid (AB-PAS) using standard techniques. For immunohistochemistry, histological sections were baked, de-paraffinized, stained and washed using standard methods. KI-67 was visualized using a 1/80 dilution of an anti-KI-67 antibody purchased from BioLegend (652402). F4/80 was visualized using a 1/75 dilution of anti-F4/80 antibody purchased from Abcam (ab6640).
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10

Apoptosis and Immune Cell Quantification in Kidney Tissue

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We detected apoptosis by the terminal deoxynucleotidyl transferase-mediated dUTP nick end-labeling (TUNEL) using the ApopTag Plus Peroxidase In Situ Apoptosis Kit (Millipore, MA, USA). Kidney sections were prepared according to the procedure of the Vectastain Elite ABC kit (Vector Laboratory, CA, USA). Anti-CD3 antibody (Santa Cruz Biotechnology, CA, USA) and anti-F4/80 antibody (Abcam, Cambridge, UK) were used and revealing reaction was performed with an AEC Chromogen Kit (Immunotech, Marseille, France). All of these sections were examined in a blinded manner using light microscopy. The number of positive cells was quantified per high power field for each kidney and at least 20 fields were reviewed for each slide.
For immunofluorescence staining, sections were incubated with anti-EP4 antibody (Santa Cruz Biotechnology) and anti-aquaporin-1 (AQP-1) antibody (Millipore) overnight and then visualized with anti-rabbit Alexa Fluor-488 and -594 (Life Technologies, OR, USA). The images were captured by confocal microscopy (LSM5 Live Configuration Variotwo VRGB; Zeiss, Germany).
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