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19 protocols using anti smad7

1

Western Blot Analysis of Fibrosis Markers

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Cells were lysed in buffer (20 mM Tris-HCl pH 8, 150 mM NaCl) containing a protease inhibitor. Protein concentrations were determined using a BCA Protein Assay Kit. A total of 20–30 μg of proteins were separated using 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred to a nitrocellulose membrane. The membrane was blocked with 5% (w/v) non-fat milk in Tris-buffered saline with 20% TWEEN-20 (TBS-T). Membranes were then incubated in primary antibodies overnight: anti-TGF-β1 (Santa Cruz Biotechnology), Anti-α-SMA (Sigma-Aldrich), Anti-collagen I (Santa Cruz Biotechnology), Anti-fibronectin (Abcam), Anti-iNOS (Abcam), Anti-IL-10 (Santa Cruz Biotechnology), Anti-p-Smad2 (Cell Signaling Technology), Anti-Smad2 (Santa Cruz Biotechnology), Anti-p-Smad3 (Cell Signaling Technology), Anti-Smad3 (Santa Cruz Biotechnology), Anti-Smad7 (Santa Cruz Biotechnology), and Anti-p-NF-κB, Anti-NF-κB, Anti-p-IκBα, Anti-IκBα (Cell Signaling Technology). After incubation, anti-rabbit IgG and anti-goat IgG (Santa Cruz Biotechnology) were used to detect proteins. The membranes were visualized using an enhanced chemiluminescence detection (ECL) kit (Amersham Pharmacia Biotech, Piscataway, NJ, United States). Densitometric analysis was performed using ImageJ software1.
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2

Western Blot Analysis of ECM Proteins

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After tissues were homogenized in liquid nitrogen, the homogenate was lysed on ice for 30 min in lysis buffer (BioTeKe, Beijing, China). The lysates (20–40 μg) of total protein were loaded per well and separated on a 10% SDS-polyacrylamide gel. Primary antibodies were anti-CTGF (1:5000 dilution, Abcam, Shanghai, China), anti-collagen-II (1:5000 dilution, Abcam), anti-collagen-IV (1:5000 dilution, Abcam), anti-Smad 2/3 (1:1000 dilution, Cell Signaling Technology, Boston, MA), anti-Smad 7 (1:1000 dilution, Santa Cruz Biotech, Santa Cruz, CA), anti-p-Smad2 (1:1000 dilution, Cell Signaling Technology), and anti-actin antibodies (1:5000 dilution, Santa Cruz Biotech). The secondary antibody was a peroxidase-coupled anti-goat IgG (GE Healthcare). The membrane was exposed to ECL Hyperfilm (GE Healthcare), and the film was developed. The bands were quantified by densitometry using ImageJ. Results were from triplicate experiments.
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3

Quantitative Western Blot Analysis of TGF-β Signaling

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ESCs and endometrial tissues were first lysed with lysis buffer and centrifuged at 12,000 × g for 15 min at 4°C. A BCA protein assay kit (Beyotime) was used to determine the quantity of protein. Protein samples (50 μg) were separated with SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes. The PVDF membranes were blocked with 5% nonfat milk in TBST (10 mM Tris-HCl, 100 mM NaCl, 0.1% Tween-20, pH 7.4) for an hour at room temperature and then incubated in primary antibody overnight at 4°C. The primary antibodies used in this study were rabbit anti-β-actin (1 : 2500, control), anti-TGF-b1 (1 : 1000), anti-p-Smad2 (1 : 500), anti-Smad2 (1 : 1000), anti-p-Smad3 (1 : 1000), anti-Smad3 (1 : 500), anti-Smad4 (1 : 200), and anti-Smad7 (1 : 500) all from Santa Cruz Biotechnology. Membranes were then incubated with horseradish peroxidase-labeled goat anti-rabbit secondary antibody (1 : 10,000) for an hour at room temperature. Protein bands were visualized using Luminata Crescendo Western HRP Substrate (Millipore, Billerica, MA, USA) and a molecular imager (Bio-Rad, Philadelphia, PA, USA). Densitometry analysis was determined relative to β-actin using 1-D Analysis Software (National Institutes of Health, USA).
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4

Western Blot Analysis of EMT Markers

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Cells from untreated group, TGF-β1-treated and SB431542-treated cells were washed 3 times with ice-cold PBS. Lysis buffer was then added, and the cells were lysed on ice for 30 min, followed by centrifugation at 12,000 rpm for 10 min at 4°C to remove cell debris. Protein samples were mixed with loading buffer and heated at 100°C for 10 min, after which the samples were separated by 10% SDS-PAGE gels (Bio-Rad, California, USA). Proteins were then transferred to polyvinyl difluoride membranes (Solarbio Systems, Beijing, China). Membranes were blocked in 5% nonfat milk in TBST buffer for 1–2 h at room temperature. The blots were incubated with primary antibodies overnight at 4°C with rabbit anti-p-Smad2 (1∶1000, Cell Signaling Technology, Massachusetts, USA), anti-Smad7 (1∶200, Santa Cruz Biotechnology, California, USA), anti-E-cadherin (1∶500, Abcam, Cambridge, United Kingdom), mouse anti-vimentin (1∶100, Santa Cruz Biotechnology, California USA), or anti-N-cadherin antibodies (1∶1000, Abcam, Cambridge, United Kingdom)This procedure was followed by incubation with sheep anti-mouse (1∶20000) or anti-rabbit (1∶20000) HRP-labeled secondary antibodies for 2 h at room temperature. The bands were detected with an ECL reagent kit (Thermo Systems, Massachusetts, USA). β-Actin immunoblots served as a loading control. All experiments were repeated three times.
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5

Immunofluorescence Staining of Formalin-Fixed Tissue

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We used our previously-described immunofluorescence protocol 14 (link) to stain serial sections of formalin-fixed, paraffin-embedded tissue. Slides were incubated with either rabbit polyclonal anti–Smad7 (Santa Cruz Biotechnology), mouse monoclonal anti-CD14 (Cell Marque, Rocklin, California), or irrelevant isotype-matched antibody overnight at 4°C. Sections then were washed, incubated with anti-mouse or anti-rabbit secondary antibodies, washed, stained with DAPI, and visualized by confocal microscopy.
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6

Comprehensive Kidney Protein Analysis

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Western blot was performed using kidney cortex as described in our previous study [25 (link)]. The primary antibodies were anti-KEAP1 (Santa Cruz Biotechnology, Dallas, TX, USA; 1:1,000), anti-NRF2 (Santa Cruz Biotechnology; 1:1,000), anti-Histone H3 (Santa Cruz Biotechnology; 1:500), anti-4-HNE (Alpha Diagnostic, San Antonio, TX, USA; 1:3, 000), anti-3-NT (Millipore, Temecula, CA, USA; 1:1,000), anti-TGF-β1 (Cell Signaling, Beverly, MA, USA; 1:500), anti-COL4 (Abcam, Cambridge, MA, USA, 1:500), anti-FN (Santa Cruz Biotechnology; 1:500), anti-Smad7 (Santa Cruz Biotechnology; 1:1,000), anti-Smad3 (Santa Cruz Biotechnology; 1:1,000), anti-p-Smad3 (Cell Signaling; 1:500), anti-p-JNK (Cell Signaling; 1:500), anti-PDCD4 (Santa Cruz Biotechnology; 1:1,000), anti-t-JNK (Cell Signaling; 1:1,000), anti-Actin (Santa Cruz Biotechnology; 1:2,000) and anti-GAPDH (Santa Cruz Biotechnology; 1:3,000). These antibodies were routinely validated when they arrived from suppliers with previous positive tissues that had been defined either based on the knockout or overexpression of the target protein.
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7

Immunoprecipitation Assay for Smad7 Acetylation

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For immunoprecipitation, the protein lysates were prepared from control LPMC treated with Ex527 or DMSO for 8 h and IBD LPMC treated with Cay10591 or DMSO. Proteins were immunoprecipitated with 2 μg/500 μl of anti-Smad7 (Santa Cruz Biotechnology, Santa Cruz, CA, USA) or control isotype antiserum for 2 h followed by incubation with protein A/G agarose beads overnight. The resulting immunoprecipitates were washed four times with cold lysis buffer, separated by SDS-polyacrylamide gel electrophoresis, and immunoblotted with antibodies against acetyl-lysine (final dilution 1:2,000, Cell Signaling Technology, Danvers, MA, USA) followed by a horseradish peroxidase-conjugated anti-rabbit IgG antibody (Promega, Madison, WI USA) or with antibody against ubiquitin (final dilution 1:400, Santa Cruz Biotechnology) followed by a horseradish peroxidase-conjugated anti-mouse IgG antibody. The reactions were detected and analyzed as above. At the end, the blots were stripped and incubated with anti-Smad7 antibody (final concentration 1 µg/ml, R&D Systems).
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8

Western Blot Protein Analysis Protocol

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Western blot analyses were performed as described previously [7 (link)]. Briefly, samples (20 μg protein) were subjected to SDS–PAGE. The proteins were transferred onto nitrocellulose membranes, which were probed with the specific antibodies: anti-ZO-1, anti-vimentin, anti-Smad7 and anti-Smurf2 (Santa Cruz, 1:1000), anti-pan-Akt (phospho T308) antibody (Abcam) also known as anti-pAkt, anti-total Akt, (Cell Signaling, 1:1000) and anti-FN (BD Biosciences, 1:1000). A peroxidase-conjugated goat anti mouse IgG (1: 10 000) was used as a secondary antibody. For detection of other proteins or β-actin, the membranes were treated with Stripping buffer and then re-probed with another antibody or β-actin antibody, the latter served as an internal control.
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9

Immunofluorescence Staining of Formalin-Fixed Tissue

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We used our previously-described immunofluorescence protocol 14 (link) to stain serial sections of formalin-fixed, paraffin-embedded tissue. Slides were incubated with either rabbit polyclonal anti–Smad7 (Santa Cruz Biotechnology), mouse monoclonal anti-CD14 (Cell Marque, Rocklin, California), or irrelevant isotype-matched antibody overnight at 4°C. Sections then were washed, incubated with anti-mouse or anti-rabbit secondary antibodies, washed, stained with DAPI, and visualized by confocal microscopy.
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10

Immunoprecipitation of Smad7 and CAR3

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Prepared heart tissue and cell samples were solubilized in immunoprecipitation lysis buffer (20 mM Tris pH7.5, 150 mM NaCl, 1 mM EDTA, 1% Nonidet P-40, 5% glycerol, protease inhibitor cocktail) and precipitated by centrifugation. The prepared tissue and cell supernatants (800 μg) were incubated with anti-CAR3 (Santa Cruz, 1μg per 250 μg of total protein) antibody overnight at 4°C followed by incubation with 30 μL of protein G Agarose beads (Santa Cruz) for 4 hours at 4°C. After being washed three times with cold wash buffer and once with lysis buffer, the immunoprecipitations were resuspended in 30 μL of loading buffer and subjected to western blot for examination of Smad7. Following consecutive washes, the immunoprecipitations containing the CAR3-bound or IgG control-bound proteins were resuspended in 30 μL of loading buffer and subjected to western blot for examination of Smad7. Whole lysate/input sample was used as a control of the immunoprecipitation enrichment. Then, tissue and cell lysates (800 μg) were prepared and carried out by incubation with anti-Smad7 ((Santa Cruz, 1 μg per 250 μg of total protein) antibody overnight at 4°C followed by addition of 30 μL of protein G Agarose beads. The eluted samples were further analyzed via western blotting to detect the Ac-lysine modification of Smad7.
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