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2 943 protocols using β actin

1

Western Blot Analysis of Protein Targets

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For western blots, in brief, we collected cells from various treatment groups and lysed them in RIPA buffer (Beyotime Biotechnology, Nantong, China) including 1% protease inhibitor (Cell Signaling Technology). The protein concentration was measured using the BCA Protein Assay kit (Beyotime Biotechnology), and total protein (50 μg) was separated using sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE; 10%) and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore). After blocking with 5% skim milk in Tris-buffered saline-Tween (TBST) buffer under room temperature for 1 h, we incubated the membranes with primary antibody against S100A9, DHX9, QKI, MID1 (1:1000; Abcam, Cambridge, MA, USA), for 1 day at 4 °C, followed by incubation with HRP-conjugated secondary antibody (1:5000; Rockland, Limerick, PA, USA) at room temperature for 1 h. Anti-GAPDH antibody (1:1000; Affinity, Cambridge, MA, USA), β-actin or Hsp70 (1:1000; Abcam) measured GAPDH, β-actin or Hsp70 as protein loading controls. We visualized the blots using a chemiluminescent reaction system (ECL; Beyotime, Shanghai, China).
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2

Comprehensive Protein Analysis in Mice

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Total protein was extracted from the cells or tumor tissues of the mice with RIPA buffer (CST, USA). Protein concentration was measured by using the BCA Protein Quantification Kit (Abbkine, USA). Same concentration of protein was divided by SDS-PAGE (12% polyacrylamide gels), transferred to PVDF membranes (Millipore, USA) in the subsequent step. The membranes were hindered with 5% milk and hatched overnight at 4°C with the primary antibodies for Cyclin D1 (1:1000) (Abcam, USA), p-γH2AX (1:1000) (Abcam, USA), γH2AX (1:1000) (Abcam, USA), and β-actin (1:1000) (Abcam, USA), in which β-actin served as the control. Then, the corresponding second antibodies (1:1000) (Abcam, UK) were used for hatching the membranes 1 hour at room temperature, followed by the visualization by using an Odyssey CLx Infrared Imaging System. The results of Western blot analysis were quantified by ImageJ software.
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3

Western Blot Analysis of LBH Protein

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Total proteins were extracted from the cells or mice tissues with RIPA buffer (Cell Signaling Technology). Protein concentrations were measured by using a BCA Protein Quantification Kit (Abbkine, Waltham, MA, USA). The same concentration of protein was divided by SDS/PAGE (12% polyacrylamide gels) and transferred to PVDF membranes (Millipore, Burlington, MA, USA) in a subsequent step. The membranes were hindered with 5% milk and hatched overnight at 4 °C with the primary antibodies for LBH (dilution 1 : 1000; Abcam, Cambridge, MA, USA) and β‐actin (dilution 1 : 1000; Abcam) in which β‐actin served as the control. Then, the corresponding second antibodies (dilution 1 : 1000; Abcam) were used for hatching the membranes for 1 h at room temperature, followed by visualization using an Odyssey CLx Infrared Imaging System (LI‐COR Biosciences, Lincoln, NE, USA).
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4

Protein Expression Analysis in Cells

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Total proteins were obtained from the mice tissues or cells with RIPA buffer (CST, USA). Protein concentrations were analyzed by applying the BCA Protein Quantification Kit (Abbkine, USA). Same concentration of protein was divided by SDS-PAGE (12% polyacrylamide gels), transferred to PVDF membranes (Millipore, USA) in the subsequent step. The membranes were hindered with 5% milk and hatched overnight at 4° C with the primary antibodies for STAT3 (Abcam, USA), GPX4 (Abcam, USA), SLC7A11 (Abcam, USA), and β-actin (Abcam, USA), in which β-actin served as the control. Then, the corresponding second antibodies (Abcam, USA) were used for hatching the membranes 1 hour at room temperature, followed by the visualization by using an Odyssey CLx Infrared Imaging System.
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5

Western Blot Analysis of USC Proteins

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The total proteins were extracted from USCs using RIPA Lysis Buffer (Beyotime, Shanghai, China). Total cell lysates were separated on 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes. After blocking with 5% nonfat dried milk in TBST, blots were probed with primary antibodies to ATF5, mtHSP70, HSP60, LONP1, β-actin (Abcam, USA. ATF5: ab184923, mtHSP70: ab171089, HSP60: ab190828, LONP1: ab103809, β-actin: ab8226) overnight at 4 °C and secondary antibody (Abcam, Cambridge, MA, USA) incubation at 37 °C for 1 h according to standard protocols. Immunoreactive proteins were visualized using an electrochemiluminescence system (Tinon, China).
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6

Comprehensive Protein Quantification and Analysis

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Total proteins were obtained from the mice tissues or cells with RIPA buffer (CST, USA). Protein concentrations were analyzed by applying the BCA Protein Quantification Kit (Abbkine, USA). Same concentration of protein was divided by SDS-PAGE (12% polyacrylamide gels), transferred to PVDF membranes (Millipore, USA) in the subsequent step. The membranes were hindered with 5% milk and hatched overnight at 4°C with the primary antibodies for Bcl-2 (Abcam, USA), Bax (Abcam, USA), cleaved caspase3 (Abcam, USA), LC3B (Abcam, USA), p62 (Abcam, USA), Beclin-1 (Abcam, USA), AKT (Abcam, USA), mTOR (Abcam, USA), p-AKT (Abcam, USA), p-mTOR (Abcam, USA), and β-actin (Abcam, USA), in which β-actin served as the control. Then, the corresponding second antibodies (Abcam, USA) were used for hatching the membranes 1 h at room temperature, followed by the visualization by using an Odyssey CLx Infrared Imaging System.
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7

Protein Expression and Quantification by Western Blot

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The soluble protein was prepared in RIPA lysis buffer (Beyotime, China) added with 1% phenylmethanesulfonyl fluoride (PMSF) (Beyotime, China). Equivalent protein (20–50 μg) was subjected to SDS-PAGE and transferred to electrophoretically PVDF membranes. After being immersed in blocking buffer (EpiZyme, China) at room temperature for 10 min, the membranes were incubated with specific primary rabbit antibodies at 4°C overnight. This is followed by incubating with secondary antibodies (1:5000, Beyotime, China) at room temperature for 1 h. Then, the antigen–antibody complex was detected by enhanced chemiluminescence (ECL) reagent. GAPDH and β-actin were used as loading controls.28 (link) The primary antibodies were used as follows: GAPDH (1:5000, Abcam, UK), β-actin (1:5000, Abcam, UK), Bcl-2 (1:2000, Abcam, UK), Bax (1:3000, Abcam, UK), Beclin-1 (1:1000, CST, USA), LC3 (1:1000, CST, USA), P62 (1:1000, CST, USA), AMPK (1:1000, Waneibio, China), phospho-AMPK (1:1000, Waneibio, China), mTor (1:500, Waneibio, China), phospho-mTor (1:500, Waneibio, China).
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8

Protein Expression Analysis by Western Blot

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Total proteins were extracted from cells or mice tissues with RIPA buffer (CST, USA). Protein concentrations were measured using the BCA Protein Quantification Kit (Abbkine, USA). The same amount of protein samples were divided by SDS-PAGE (12% polyacrylamide gels), followed by transferring to PVDF membranes (Millipore, USA). The membranes were blocked with 5% milk and incubated with the primary antibodies for WTAP (1:1000) (Abcam, USA), Tsg101 (1:1000) (Abcam, USA), CD63 (1:1000) (Abcam, USA), Grp94 (1:1000) (Abcam, USA), caspase3 (1:1000) (Abcam, USA), PARP (1:1000) (Abcam, USA), and β-actin (1:1000) (Abcam, USA) at 4 °C overnight, in which β-actin served as the control. Then, the corresponding second antibodies (1:1000) (Abcam, USA) were used for hatching the membranes at room temperature for 1 h, followed by visualization using an Odyssey CLx Infrared Imaging System.
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9

Chondrocyte Pellet Protein Analysis

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Chondrocyte pellets were stored at −80 °C until assayed. Frozen samples were pulverized under liquid nitrogen and placed in a homogenization buffer (10 mM phosphate buffer, 250 mM sucrose, 1 mM EDTA, 0.1 mM phenylmethanesulfonyl fluoride or phenylmethylsulfonyl fluoride, and 0.1% [v/v] Tergitol, pH 7.5). Homogenates were centrifuged at 27,000g for 10 min at 4 °C to harvest supernatant for immunoblotting with antibodies. Immunoblotting was performed using primary monoclonal antibodies against PPAR-δ (1:2,000 dilution; Abcam, Cambridge, MA, USA), type II collagen (1:1,000 dilution; EMD Millipore, Billerica, MA, USA), TGF-β (1:1,000 μg/mL; Santa Cruz Biotechnology, Inc., Dallas, TX, USA), and β-actin (1:10,000 dilution; Abcam) and secondary antibodies tagged horseradish peroxidase (HRP) (rabbit for PPAR-δ and TGF-β, 1:20,000 dilution, mouse for type II collagen and β-actin, 1:5,000 dilution). Cell pellets were processed for NuPAGE gel (Invitrogen). Proteins separated in the gel were transferred to nitrocellulose membrane (GE Healthcare Life Sciences, Pittsburgh, PA, USA) using TE77XP semidry blotter with 10 V for 3 h (Hoefer, Inc., Holliston, MA, USA). Protein band signals on blots were detected on Amersham Hyperfilm enhanced chemiluminescence (GE Healthcare Life Sciences) using SuperSignal West Pico Chemiluminescent Substrate kit (Thermo Fisher Scientific, Rockford, IL, USA).
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10

Protein Extraction and Western Blot Analysis

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Approximately twelve adult fly heads were homogenized per sample using a motorized pestle in lysis buffer containing 1 M NaCl, 1 M Tris, 0.5% Triton-X100 with protease inhibitor cocktail (Pierce Biotechnology) at 4 °C. After sonication, the lysates were cleared by centrifugation at 14,000 rpm for 15 minutes. Protein concentration was determined using Bradford assay kit (BioRad) and 15 μg of protein were loaded/well for subsequent western blot analysis using anti-Tyrosine Hydroxylase (Millipore) and β-Actin (Abcam) as loading control. For SH-SY5Y cells, cells were lysed using the M-PER protein extraction reagent (Thermo Fisher Scientific) containing a protease inhibitor cocktail (Pierce, Thermo Fisher Scientific). The levels of Sarm1 were analyzed using anti-Sarm1 antibody (Genetex) and β-Actin (Abcam) was used as a loading control.
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