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Mouse anti cas9

Manufactured by Cell Signaling Technology

Mouse anti-Cas9 is a monoclonal antibody that specifically recognizes the Cas9 protein, a key component of the CRISPR-Cas9 gene editing system. This antibody can be used to detect and quantify Cas9 expression in various applications.

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6 protocols using mouse anti cas9

1

EV Protein Level Analysis via Western Blotting

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For analysis of protein levels in EVs, isolated EVs were lysed with RIPA buffer, followed by addition of 1X Laemlli buffer and incubation at 95°C for 5 min. Samples were subject to standard Western blotting with chemiluminescence detection. The following antibodies were used as recommended by the manufacturer: rabbit anti‐Src (Cat#: 2109, 1:1000), rabbit anti‐calnexin (Cat#: 2679, 1:5000), rabbit anti‐CD‐9 (Cat#: 13403 for human species, 1:1000), rabbit anti‐GAPDH (Cat#: 2118, 1:10,000), rabbit anti‐gamma‐tubulin (Cat#: 5886, 1:1000), and mouse anti‐Cas9 (Cat#: 14697, 1:1000) were all purchased from Cell Signaling Technology. Mouse anti‐VSV‐G (Cat#: EB0010, Kerafast, 1:1000), rabbit anti‐syntenin (Cat#: ab19903, Abcam, 1:1000), mouse anti‐CD63 (Cat#: 556019, BD Pharmingen, 1:500). Secondary antibodies anti‐rabbit IgG HRP (Cat#: 7074, 1:5000), anti‐mouse IgG HRP (Cat# 7076, Cell Signaling Technology, 1:5000). The anti‐myristoylated octapeptide antibody described in this study was used at dilutions of 1:250, 1:500, or 1:1000. Cas9 recombinant protein was purchased from Sigma Aldrich (Cat# Cas9Prot). EV protein analysis was done in accordance with the MISEV 2018 guidelines (Théry et al., 2018 (link)). The band intensity was quantified by Image J software.
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2

Immunohistochemistry of Drosophila Wing Discs

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Immunohistochemistry of wing imaginal discs was performed using standard procedures. Briefly, larva were dissected in ice cold PBS and fixed in 4% Paraformaldehyde in phosphate buffered saline (PBS) containing 0.05% Triton-X100 for 25 min at room temperature. Larva were washed three times in PBS containing 0.3% Triton-X100 (PBT) and then blocked for 1 hr at room temperature in PBT containing 1% heat-inactivated normal goat serum. Subsequently, larva were incubated with first antibody (mouse anti-Cas9 (Cell Signaling) 1:800; mouse anti-Cut (DSHB, Gary Rubin) 1:30; guinea pig anti-Sens (Boutros lab, unpublished) 1:300; rabbit anti-Evi [Port et al., 2008 (link)] 1:800) in PBT overnight at 4°C. The next day, samples were washed three times in PBT for 15 min and incubated for 2 hr at room temperature with secondary antibody (antibodies coupled to Alexa fluorophores, Invitrogen) diluted 1:600 in PBT containing Hoechst dye. Samples were washed three times 15 min in PBT and mounted in Vectashield (Vectorlabs). To visualize apoptotic cells wing discs expressing the apoptosis sensor GC3Ai (Schott et al., 2017 (link)) was fixed in 4% PFA, washed in PBT containing Hoechst and mounted in Vectashield.
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3

Antibody Characterization for ChIP-Seq

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Antibodies used in this study were rabbit anti-CTCF (Millipore, 07–729, for western blotting), rabbit anti-Histone H3 (abcam, ab1791, for western blotting), rabbit anti-CTCF (Active Motif, 61311, for microChIP-seq), rabbit anti-Rad21 (Santa Cruz, sc-98784, for microChIP-seq), rabbit anti-H3K4me1 (abcam, ab8895, for ChIP-seq), rabbit anti-H3K4me3 (Millipore, 04–745, for ChIP-seq), rabbit anti-H3K27ac (Active Motif, 39133, for ChIP-seq), mouse anti-H3K27me3 (Active Motif, 61017, for ChIP-seq), mouse anti-Myc antibody (Santa Cruz, sc-40, for western blotting), and mouse anti-Cas9 (Cell Signaling, 14697, for western blotting). Goat anti-Rabbit IgG (H+L)-HRP (Bio Rad, 1706515) and Goat anti-Mouse IgG (H+L)-HRP (Invitrogen, 31430) were used as secondary antibody for western blotting.
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4

Western Blot Protein Analysis Protocol

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Whole-cell lysates, nuclear extracts, or acid extracts were prepared from cells pelleted after washing with phosphate-buffered saline (PBS). Samples were diluted in NuPAGE LDS Sample Buffer (Novex) and 10% 2-mercaptoethanol. Protein samples were run on NuPAGE Bis-Tris mini gels (Novex), and membrane transfer was performed in 1× MES NuPAGE buffer (Novex). The following antibodies were used for probing of membranes: Primary antibodies–mouse anti-c-Myc (Santa Cruz Biotechnology, #sc-40), mouse anti-n-Myc (Santa Cruz Biotechnology, #sc-53993), mouse anti-H3 (Upstate/Millipore Sigma, #05-499), rabbit anti-H3.3 (Millipore Sigma, #09-838), rabbit anti-H4 (Millipore Sigma, #04-858), rabbit anti-H3K27M (Millipore Sigma, #ABE419), mouse anti-Cas9 (Cell Signaling, #14697), rabbit anti-H3K27me3 (Cell Signaling, #C36B11), rabbit anti-H3.3S31p (AbCam #ab92628), rabbit anti-H3K27ac (Abcam, #ab4729), rabbit anti-K36me3 (Abcam, #ab9050), rabbit anti-NOTCH (Abcam, #ab52627), rabbit anti-ASCL1(MASH1) (Abcam, #ab74065), mouse anti-beta actin (Sigma, #A1978), rabbit anti-RBPJ (Millipore-Sigma #ABE384); secondary antibodies—IRDye 680RD goat anti-mouse (1:10,000; LiCor) and IRDye800CW goat anti-rabbit (1:10,000; LiCor). Blots were imaged, data were captured on a Licor Odyssey CLx, and quantification was performed with the Licor ImageStudio software.
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5

Quantification of Cleaved ABE in BE-eVLPs

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BE-eVLPs were lysed as described above. Protein extracts were separated by electrophoresis at 150 V for 45 min on a NuPAGE 3–8% Tris-Acetate gel (Thermo Fisher Scientific) in NuPAGE Tris-Acetate SDS running buffer (Thermo Fisher Scientific). Transfer to a PVDF membrane was performed using an iBlot 2 Gel Transfer Device (Thermo Fisher Scientific) at 20 V for 7 min. The membrane was blocked for 1 h at room temperature with rocking in blocking buffer: 1% bovine serum albumin (BSA) in TBST (150 mM NaCl, 0.5% Tween-20, and 50 mM Tris-HCl). After blocking, the membrane was incubated overnight at 4°C with rocking with mouse anti-Cas9 (Cell Signaling Technology; 14697, 1:1000 dilution). The membrane was washed three times with 1xTBST for 10 min each time at room temperature, then incubated with goat anti-mouse antibody (LI-COR IRDye 680RD; 926-68070, 1:10000 dilution in blocking buffer) for 1 h at room temperature with rocking. The membrane was washed as before and imaged using an Odyssey Imaging System (LI-COR). The relative amounts of cleaved ABE and full-length gag–ABE were quantified by densitometry using ImageJ, and the fraction of cleaved ABE relative to total (cleaved + full-length) ABE was calculated.
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6

Antibody Characterization for ChIP-Seq

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Antibodies used in this study were rabbit anti-CTCF (Millipore, 07–729, for western blotting), rabbit anti-Histone H3 (abcam, ab1791, for western blotting), rabbit anti-CTCF (Active Motif, 61311, for microChIP-seq), rabbit anti-Rad21 (Santa Cruz, sc-98784, for microChIP-seq), rabbit anti-H3K4me1 (abcam, ab8895, for ChIP-seq), rabbit anti-H3K4me3 (Millipore, 04–745, for ChIP-seq), rabbit anti-H3K27ac (Active Motif, 39133, for ChIP-seq), mouse anti-H3K27me3 (Active Motif, 61017, for ChIP-seq), mouse anti-Myc antibody (Santa Cruz, sc-40, for western blotting), and mouse anti-Cas9 (Cell Signaling, 14697, for western blotting). Goat anti-Rabbit IgG (H+L)-HRP (Bio Rad, 1706515) and Goat anti-Mouse IgG (H+L)-HRP (Invitrogen, 31430) were used as secondary antibody for western blotting.
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