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42 protocols using isolectin b4

1

Cardiac Non-Myocyte Isolation and Flow Cytometry

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Flow cytometric analysis of cell surface markers was performed using CD31-Brilliant Violet 421 (102423, Biolegend, San Diego, CA, USA) and isolectin B4 (B-1205, Vector Labs) antibodies. For isolectin B4, cell fixation and permeability were performed following the protocol of the BD flow kit and DyLight 488 Streptavidin was used as the secondary antibody (SA-5488, Vector Lab). Non-myocytes were isolated from the heart using the fibroblast isolation protocol but the cells were seeded in fibronectin-coated culture dishes overnight. After 24 h minimum culture, the non-myocytes were dissociated using Accutase (Millipore, Billerica, MA, USA) and immunostained with flow cytometric staining buffer (1% FBS + 0.1% NaN3 in PBS) for 30 min at 4 °C, followed by washing with the washing buffer and subsequent analysis using a Beckman-Coulter (Dako) CytoFLEX S. The data obtained were analyzed and presented using Flowjo software. The negative control group was processed without primary antibody first and subjected to all other processes the experimental groups were exposed to. Flow cytometric sorting for RNA-sequencing (RNA-seq) was immediately performed after isolating non-myocytes using the BD Influx (BD Biosciences, CA, USA).
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2

Nerve Crush Injury Protein Analysis

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The middle part of the gastrocnemius muscle and the distal end of crush nerves were harvested and proteins were extracted. Proteins (50 μg) were resolved by SDS-polyacrylamide gel electrophoresis and transferred to blotting membranes. After blocking with nonfat milk, the membranes were incubated with antibodies: S-100 (1:1000 dilution, Merck Millipore, Burlington, MA, USA), neurofilament (1:1000 dilution, Merck Millipore, Burlington, MA, USA), CD 68 (1:1000 dilution, Bio-rad, Hercules, CA, USA), von Willebrand factor (1:200 dilution, Santa Cruz Biotechnology, Dallas, TX, USA), Isolectin B4 (1:200 dilution, Vector Laboratories, Burlingame, CA, USA), desmin (1:1000 dilution, Abcam, Cambridge, MA,USA), acetylcholine receptor (1:1000 dilution, Merckmillipore, Burlington, MA, USA), GAPDH (1: 2000 dilution, Santa Cruz Biotechnology, Dallas, TX, USA) overnight at 4°C. The membranes were incubated with horseradish peroxidase-conjugated secondary antibody and developed using ECL western blotting reagents. The intensity of protein bands was determined by a computer image analysis system (IS1000) (Alpha Innotech Corporation, San Leandro, CA, USA) [29 (link)].
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3

Tissue Preparation for Vascular Analysis

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Three weeks after surgery, 40 μL of Isolectin B4‐FITC (Fluorescein Griffonia Simplicifolia Lectin I, Isolectin B4; Vector Laboratories Inc., Burlingame, CA) was injected into the tail vein using a insulin syringe, and then 20 minutes later, mice were sacrificed under adequate anesthetization. Immediately after sacrifice, mice were perfused with 20 mL of PBS and then with the equivalent volume of 4% paraformaldehyde (PFA)/PBS by cardiac puncture. Subsequently, hindlimbs were resected and incubated in 4% PFA/PBS at 4°C overnight. Thereafter, ATMs, after QQMNCTx and PBMNCTx, were excised and embedded into paraffin for the tissue sample preparation. Alternatively, the muscles, after QQMNCTx, GmCD34Tx, and eEPCTx, were coated with optimal cutting temperature (O.C.T.) compound (Tissue‐Tek; Sakura Finetek Japan Co., Ltd., Tokyo, Japan), immediately frozen in liquid nitrogen, and refrigerated until use at −80°C. Cross‐sectional tissue samples with the thickness at 6 to 8 μm for paraffin section or at 10 μm for frozen sections, were sliced from tissue blocks of muscles and then subjected to assessments as described below.
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4

Immunofluorescence Staining of Cardiac Tissue

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Cryosections (7 µm in thickness) were stained with TRITC-conjugated wheat germ agglutinin (WGA, Sigma-Aldrich, Taufkirchen, Germany) to outline cardiomyocytes and with Isolectin B4 (Vector Laboratories, Newark, CA, USA) to visualize endothelial cells and capillaries. Fibrosis was detected with the Sirius Red staining method.
Immunofluorescence staining was performed using standard procedures. Antibodies used for immunofluorescence staining were: hosphor-p38 MAPK (#9211), hosphor-Akt #(9271) (both from Cell Signaling Technology, Danvers, MA, USA), α-actinin (A7811, Sigma-Aldrich, Taufkirchen, Germany) followed by Anti-Rabbit/Mouse IgG Alexa Fluor® 488 (#4412), or Anti-Rabbit/Mouse IgG Alexa Fluor® 555 secondary antibody (#4409, NEB, Ipswich, MA, USA). Nuclear staining was performed with Mounting Medium (#HP20.1, Roth, Karlsruhe, Germany) with DAPI.
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5

Quantifying Cardiac Morphology and Vasculature

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After euthanasia, the heart tissue was excised, flushed with 1 mol/L KCl solution, and fixed in 10% formalin, embedded in paraffin, and sectioned at 4 µm. Heart cross sections were stained with 4′,6-diamidino-2-phenylindole (Invitrogen) and wheat germ agglutinin (ThermoFisher) for quantification of cardiomyocyte cross-sectional area. In addition, sections were stained with isolectin B4 (Vector Laboratories) to assess capillary density and with Sirius red for fibrosis. Quantitative measurements were determined using Nikon Elements software.
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6

Quantifying Skeletal Muscle Vascular and Apoptotic Features

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For analysis of capillary and arteriole density, gastrocnemius muscle sections (7 μm) were stained with isolectin-B4 (Vector Laboratories, B-1205; 1:100) to identify endothelial cells and the smooth muscle marker, α-smooth muscle actin conjugated to Cy3 (Sigma-Aldrich, C6198, 1:100) as previously described19 (link). High resolution images were acquired (at × 200) and counts from 18 randomly selected fields were averaged and expressed as the number of capillaries and arterioles (< 50 μm) per mm2 of muscular sections20 (link).
DNA fragmentation, associated with apoptosis, was detected in sections (7 μm) of gastrocnemius muscle using the commercially available terminal deoxynucleotidyl transferase mediated dUTP nick-end labelling (TUNEL) kit (Click-iT Plus TUNEL Alexa Fluor 594 kit, Life Technologies). Sections were counterstained with Isolectin B4 to identify endothelial cells and DAPI to label nuclei.
Skeletal tissue fibrosis was detected in transverse sections (7 µm) of gastrocnemius muscle using Mason’s Trichrome staining.
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7

Quantitative Analysis of Pericyte Coverage

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Explant tissues were cultured, washed, and stained using standard protocols as mentioned above. For the pericyte coverage analysis, the endothelium in the metatarsal assay was stained with an anti-CD31 (BD Pharmingen, 553370) antibody and in the aortic ring assay with Isolectin B4 (Vector Labs, FL-1201). Pericytes were stained with anti-αSMA (Sigma, C6198) and anti-NG2 (Millipore, AB5320) antibodies. Single images were taken using a 20 × objective focussed on the plane of vessels using a Nikon epifluorescent microscope. For quantitative analysis, using NIS Elements Software, single thresholds were calculated for each individual channel (endothelium, pericytes) and the intersection of the endothelium covered by pericytes. The analysis was blinded to treatments and was performed on masked images with different thresholds used per image as required to avoid saturation. Pericyte coverage was then calculated as % (Intersection/Endothelium), and the values were normalised to the average of the internal control (vehicle/PBS) for every experiment. The normalised values of at least three independent experiments were pooled for statistical analysis. Outliers were eliminated using the average ± 2SD mean.
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8

Retinal Vascular Visualization and Quantification

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The retinal vasculature was visualized by immunohistochemistry on retinal whole mounts in line with previous works 22. Briefly, the retinal whole mounts were freeze‐thawed and incubated overnight at 4°C in fluorescein labelled isolectin B4 (1:200; Vector Laboratories, Burlingmae, CA, USA). Retinal whole mounts were examined for changes in their vascular pattern with a microscope equipped with epifluorescence (Eclipse Ni‐E; Nikon, Amsterdam, The Netherlands). Images of the retinal vasculature were acquired through a digital photocamera (DS‐Fi1c camera; Nikon) and processed using an image‐editing software (Adobe Photoshop; Adobe Systems, Inc., Mountain View, CA, USA) to create whole retina montages in which the extent of the avascular area and the total area of pre‐retinal neovascular tufts were measured according to previous quantification studies 34. For each experimental condition, quantitative data originated from six retinas from six different mice either WT or AQP4 KO.
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9

Quantifying Vascular Density in Ischemic Tissue

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Sections were incubated with FITC-conjugated Griffonia simplicifolia lectin (Isolectin B4 1:20, Vector Lab, CA, USA) and mounted with Vectashield® mounting medium. Images were collected in the infarction remote zone and the infarction border zone in mice using an Olympus BX51 microscope equipped with a 10× objective. To quantify the vasculature, four independent fields (900 μm × 900 μm) were chosen randomly, and Isolectin B4 positive cells were captured and analyzed using NIS Elements Basic Research Software version 2.30 (Nikon Instruments Inc., NY, USA).
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10

Retinal Flatmount Immunohistochemistry Protocol

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Animals were deeply anaesthetized by intraperitoneal injection of pentobarbital (150 mg/kg bodyweight) and eyes enucleated using curved forceps. For retinal flatmount preparation, eyes were prefixed with 4% PFA for 20 min at 4 °C following excision of the cornea, lens, sclera and vitreous and isolation of the retina. Retinas were flatmounted on permeable cell culture inserts (BD Falcon) and sequentially fixed with 4% PFA from both sides for 20 min at 4 °C, respectively. For immunohistochemical staining retinal flatmounts were washed with 0.1 M phosphate buffer (PB) and then incubated with a blocking and permeabilization solution for 30 min at RT shaking. Tissue was incubated with primary antibodies against CD31 (rat, 1:100, BD Biosciences) and Isolectin B4 (1:100, Vector Labs), overnight at 4 °C. The next day the tissue was washed and incubated with corresponding secondary antibodies conjugated to Cy3 (Thermo Fischer) for 2 h at RT. All antibodies were diluted in blocking and permeabilization solution (TNB, 0.1% TBST, 3% normal goat serum). Flatmounts were mounted in 0.1 M PB on Superfrost PlusTM microscope slides (Thermo Fisher) and coverslipped using Mowiol.
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