The largest database of trusted experimental protocols

8 protocols using dra00b

1

Quantifying Amniotic Membrane Protein Content

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total protein in each batch of AMEED was assessed
using a standard Bradford protein assay. Briefly, 20 µl of
each sample and a diluted standard that contained 10 µg/
µl .-globulin were added to the wells of a 96-well plate
(in duplicate), followed by the addition of 500 µl Bradford
buffer (5000006, Bio-Rad Laboratories, Inc., Hercules,
CA, USA) to each well and mixed. The optical density
at 595 nm was then measured using a spectrophotometer
(Multiskan Spectrum, Thermo Fisher Scientific Oy,
Vantaa, Finland).
The concentrations of EGF, KGF, hepatocyte growth
factor (HGF), and interleukin-1 receptor antagonist (IL1RA),
as important amniotic membrane proteins necessary
for epithelial regeneration (14 (link)), were assessed using
commercially available enzyme-linked immunosorbent
assay (ELISA) kits (Catalogue no.: DEG00, DKG00,
DHG00, and DRA00B, R & D Systems Inc., Minneapolis,
MN, USA) according to the manufacturer’s protocols.
Four batches of AMEED were used for this growth factor
analysis. The stability of the growth factors was tested
after one month to one year of storage at -70°C, after 7
days of storage in a refrigerator (2-8°C), and after 2 days
of storage at room temperature.
+ Open protocol
+ Expand
2

Quantification of Growth Factors and Cytokines in PPP, LP-PRP, and APS

Check if the same lab product or an alternative is used in the 5 most similar protocols
The concentrations of one growth factor (PDGF-BB) and four cytokines—interleukin 1 receptor antagonist (IL-1Ra), soluble TNF receptor type II (sTNF-RII), interleukin 1-β (IL-1β), and tumor necrosis factor-α (TNF-α)—in each PPP, LP-PRP, and APS sample were measured. All growth factor and cytokine quantification assays were performed using an enzyme-linked immunosorbent assay kit (PDGF-BB: Abcam System, Japan, ab181421; TNF-α: Abcam System, ab214025; sTNF-RII: Abcam System, ab184860; IL-1β: R&D Systems, US, DRT200; IL-1Ra: R&D Systems, DRA00B) without dilutions. All procedures were carried out according to the manufacturers' instructions.
+ Open protocol
+ Expand
3

In Vitro Drug Release Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
In vitro drug release profiles of both IL-1Ra and sTNFRII were quantified as described below. Lyophilized xELP depots (12 mg ELP protein) were rehydrated in either PBS (xELP[PBS]), IL-1Ra (xELP[IL-1Ra], anakinra), or sTNFRII (xELP[sTNFRII], etanercept) and incubated in either PBS or 10 % serum-containing medium (10 % fetal bovine serum (FBS) in PBS) to determine the release of each drug over 7 d. For samples in PBS, protein absorbance at 280 nm was used to quantify the concentration of released drug. In order to account for any release of uncross-linked ELP, the absorbance of xELP[PBS] was measured at each time point to serve as an experimental “blank.” The molar extinction coefficients for both IL-1Ra and sTNFRII were used at each time point, along with the Beers-Lambert Law in order to quantify drug concentrations in the supernatant at each time point. For the serum-containing medium, absorbance could not be used to quantify drug release, so human IL-1Ra and sTNFRII ELISAs were used (DRA00B and DRT200, R&D Systems, Minneapolis, MN, USA). For each ELISA, xELP[PBS] samples were measured as controls to ensure that there was no background interference from ELP fragments released by esterases or proteases in FBS.
+ Open protocol
+ Expand
4

IL1RA ELISA Analysis of Saliva Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were prepared for ELISA analysis by removing mucin precipitate and other particulate matter by centrifuging samples at 1500×g for 15 min. A commercially available IL1RA ELISA kit (R&D Systems DRA-00B) was used to measure the concentration of IL1RA samples in saliva from HIV+ subjects. The protocol supplied with the ELISA kit was followed, except that Saliva Matrix (Salimetrics LLC, 3–3000) was used as a diluent in place of the kit-provided assay diluents to better normalize the protein antibody binding conditions for saliva samples.
+ Open protocol
+ Expand
5

THP-1 Macrophage Co-Culture Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
THP-1 monocyte cells (tib-202tm; ATCC) were cultured in RPMI-1640 medium (12633012; Thermo Fischer) with 0.05 mM 2-mercaptoethanol and 10% fetal bovine serum (FBS). THP-1 cells were stimulated with phorbol 12-myristate 13-acetate (PMA) for 24 hours to induce macrophage phenotype as assessed by adherence to tissue culture flask and expression of CD11b integrin (Figure S2). For co-culture, we followed an established protocol16 (link),22 (link). Briefly, ABCB5+ DSCs or donor-matched ABCB5− fractions were plated at 2x104 cells per well in 24-well plates in 0.5 ml Dulbecco’s modified Eagle’s medium (DMEM) with 10% FBS, 100 U/ml penicillin/streptomycin and 2 mM L-glutamine. After 24 hours, THP-1 derived macrophages were seeded on top or in transwell inserts (CLS3464; Corning) at 1×105 cells per well. Co-cultures were incubated with 50 U/ml recombinant human interferon-gamma (IFN-γ) (285-IF-100; R&D Systems) for 24 hours and then stimulated with 20 ng/ml LPS (L3755; Sigma-Aldrich) and 50 U/ml IFN-γ for another 24-hour period before supernatants were harvested and analyzed by enzyme linked immunosorbent assay (ELISA) for IL-1RA (DRA00B; R&D Systems). IL-1RA levels were analyzed between conditions with unpaired t-tests.
+ Open protocol
+ Expand
6

Multiplex Biomarker ELISA Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human CCL2 (R & D Systems # DCP00), CCL13 (Thermo Scientific #), CCL17 (Thermo Scientific # EHCCL17), CCL18 (R & D Systems), CCL21 (R & D Systems # DY366), CCL22 (Thermo Scientific #), CCL26 (Raybiotech # ELH-Eotaxin3), IL1B (Invitrogen # KHC00012), IL1RN (R & D Systems # DRA00B), and TNF (R & D Systems # DTA00D) were measured in cell culture supernatants by ELISA, according to the manufacturer's instructions. Results were obtained using a Spectramax 96 well Spectrophotometer.
+ Open protocol
+ Expand
7

Inflammatory Marker Analysis of Cancer-Related Fatigue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Blood samples were typically drawn immediately after completion of assessments. Most participants were assessed between 12:00 and 6:00 P.M, except for ten participants who were assessed between 10:00 A.M. and 12:00 P.M. Blood samples were not drawn for three participants due to time constraints in the participant’s schedule. Blood was immediately spun down at 3,000 × g for 10 minutes and plasma was frozen at −80 °C until batch-wise analyses of inflammatory markers previously associated with cancer-related fatigue in both patients and survivors (Saligan and Kim, 2012 (link); Xiao et al., 2017 ).
Plasma levels of IL-6, sIL-6r, TNF-α, sTNFRII, and IL-1ra were determined with enzyme linked immunosorbent assays (ELISAs) (R&D systems HS600B, DR600, HSTA00D, DRT200, and DRA00B, respectively). Mean minimum detectable levels were 0.039 pg/ml for IL-6, 6.5 pg/ml for sIL-6r, 0.106 pg/ml for TNF-α, 0.6 pg/ml for STNFRII, and 6.3 pg/ml for IL-1ra. One TNF-α sample that was below detection level was set at the mean minimum detectable dose. C-reactive protein (CRP) levels were determined by the MD Anderson Cancer Center core clinical laboratory using high sensitivity chemiluminescent immunometric assay run on a Siemen Immulite XPi. Standard range was 0.2 – 100 pg/mL. One sample exceeded the maximum range for CRP and was repeated at 1:10 dilution.
+ Open protocol
+ Expand
8

In Vivo Temporal Profiles of Fracture-Induced Cytokines

Check if the same lab product or an alternative is used in the 5 most similar protocols
In vivo release profiles for both IL-1Ra and sTNFRII were obtained using serial collections of serum from mice. Blood was collected at day 1, 5, 14, 21, 28, 42 and 56 following fracture. All serum samples from a single group and collection day were pooled (n = 6-11 per group per time point) in order to obtain sufficient fluid volumes for detection of IL-1Ra (minimum100 μL of sample) or sTNFRII (minimum 20 μL of sample) using commercially available human ELISA kits (DRA00B and DRT200, R&D Systems). For statistical purposes, a value of ½ the lowest level of detection (LLOD) was used for any value that was below the level of detection (IL1-Ra: 3.1 pg-mL and sTNFRII: 0.3 pg-mL). The reported mean intra- and inter-assay coefficients of variation for IL-1Ra are 5.3 % and 8.6 %, respectively. The reported mean intra- and inter-assay coefficients of variation for sTNFRII are 3.5 % and 4.1 %, respectively.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!