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Chromo4 four color real time pcr detection system

Manufactured by Bio-Rad
Sourced in United States

The Chromo4 Four-Color Real-Time PCR Detection System is a laboratory instrument designed for real-time polymerase chain reaction (PCR) analysis. It is capable of detecting up to four different fluorescent dyes simultaneously during the PCR process.

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4 protocols using chromo4 four color real time pcr detection system

1

Quantitative Real-Time PCR Analysis

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Real-time quantitative PCR (qPCR) was performed on a Chromo4 four-color real-time PCR detection system (Bio-Rad). qPCR for each sample was performed twice in triplicates using a 20-μl reaction system containing 50 ng initial total RNA. Both annealing and extending temperature were set to 60°C. Forty PCR cycles were run and the melting curves were recorded. The primers used are as follows: 5′-GAAGAGAGGGAACCACAGCA-3′ (sense) and, 5′-TTGCCTGTTAAATGGGCCAC-3′ (anti-sense) for FasL; 5′-TCATCGCGGTATTCGGTTCG-3′ (sense) and 5′-CTTCACCTCCGTGATTGCCT-3′ (anti-sense) for Bim; 5′-ACGGGGTTAGCGGAGCAA-3′ (sense) and 5′-ATGTCCATTCCATGAAGTCAGC-3′ (anti-sense) for p27Kip1; 5′-CCTCCTTGGAAAGCAAA CAGTAAA-3′ (sense) and 5′-ACACTCACTGGCT TTTCATCTTC-3′ (anti-sense) for cyclin A2; 5′-AGAT CTGGCACCACACCTTCT-3′ (sense) and 5′-CTTTG ATGTCACGCACGATTT-3′ (anti-sense) for β-actin. All other parameters for the reaction system and the PCR program were set according to the manufacturer's protocol for the SYBR PrimeScript RT-PCR kit (Takara, Dalian, China). The specificity of PCR was determined by a following melting curve analysis. The relative quantification of gene expression was analyzed by the 2−ΔΔCt method.
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2

RNA Isolation and Transcription for Chondrocytes

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Total RNA was isolated from chondrocytes cultures using the TRIzol reagent (Life Technologies, Grand Island, NY, USA) according to the manufacturer’s protocol. Then, the total RNA products were immediately transcribed by reverse transcription (RT) into cDNA by using a PrimeScript RT reagent Kit with gDNA Eraser (TaKaRa, Dalian, China). Polymerase chainreaction (PCR) amplification was performed in a Chromo4 Four-Color Real-Time PCR Detection System (Bio-Rad) by using the SYBRR Premix Ex Taq II kit (TaKaRa). Primer sequences (Life Technologies) for each gene used in this study are shown in Table 1.
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3

Quantitative Real-Time PCR Assay for Gene Expression

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Total RNA samples were isolated from SH-SY5Y cells using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. The total RNA products (1 µg) were immediately transcribed into cDNA using a PrimeScript™RT Reagent kit with Genomic DNA Eraser (Takara Biotechnology Co., Ltd.). qPCR was performed on a Chromo4 Four-Color Real-Time PCR Detection system (Bio-Rad Laboratories, Inc., Hercules, CA, USA) using the SYBR® Premix Ex Taq™II (Tli RNaseH Plus) kit (Takara Biotechnology Co., Ltd.). Cycling conditions were as follows: Initial denaturation at 95°C for 30 sec, followed by 40 cycles of 95°C for 5 sec, 60°C for 20 sec and 72°C for 15 sec. Data was normalized using the 2−ΔΔCq method (11 (link)). Primers were synthesized by Thermo Fisher Scientific, Inc. (Table I).
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4

Osteogenic Differentiation of BMSCs

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Total RNA was isolated from BMSCs with the TRIzol reagent (Life Technologies, Grand Island, NY, USA) according to the manufacturer’s instructions after 2 weeks of osteogenic induction. Total RNA products were immediately converted to cDNA by reverse transcription (RT) using a PrimeScript RT reagent Kit with gDNA Eraser (TaKaRa, Dalian, China). Polymerase chain reaction (PCR) amplification was performed in a Chromo4 Four-Color Real-Time PCR Detection System (Bio-Rad) using a SYBRR Premix Ex Taq II (Tli RNaseH Plus) kit (TaKaRa). Primer sequences (Life Technologies) for each gene used in this study are shown in Table 1.

Primer sequences used in RT-PCR and qPCR

Target geneGenBank accession no.Sequences (5’–3’)
GAPDHNM_017008.4Forward, CAGGGCTGCCTTCTCTTGTGReverse, GATGGTGATGGGTTTCCCGT
RUNX2NM_001145920.2Forward, AATTAACGCCAGTCGGAGCAReverse, CACTTCTCGGTCTGACGACG
OSXNM_001037632.1Forward, GCCTACTTACCCGTCTGACTTTReverse, GCCCACTATTGCCAACTGC
OCNNM_001037939.2Forward, TCTATGACCTGCAGAGGGCTreverse,ATAGCTCGTCACAAGCAGGG;
Col1α1NM_000088.3Forward, AGTGGTTTGGATGGTGCCAAReverse, GCACCATCATTTCCACGAGC
β-cateninXM_006511927.1Forward, CTGCAACGACCTGACTGGTAReverse, GGCCATGTCCAACTCCATCA
GSK-3βXM_006522425.1Forward, AGAAGAGCCATCATGTCGGGReverse, CCAAAAGCTGAAGGCTGCTG
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