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Biotin labeling kit nh2

Manufactured by Dojindo Laboratories
Sourced in Japan

The Biotin Labeling Kit-NH2 from Dojindo Laboratories is a product designed for the labeling of biomolecules with biotin. The kit provides the necessary reagents and instructions to facilitate the covalent attachment of biotin to amine-containing compounds, such as proteins, peptides, or other biomolecules.

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21 protocols using biotin labeling kit nh2

1

Quantification of PfMSA180 Erythrocyte Interactions

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Interaction between PfMSA180 and 13 erythrocyte surface proteins was quantified by AlphaScreen as reported with slight modification35 (link),36 (link) (Fig. S2A). Briefly, reactions were carried out in 20 μl of reaction volumes per well in 384-well OptiPlate microtiter plates (PerkinElmer). Affinity-purified PfMSA180-Tr4 recombinant protein was biotinylated using a Biotin Labeling Kit-NH2 (Dojindo Molecular Technologies, Kumamoto, Japan) according to the manufacturer’s instructions. Then 5 μl of 10 nM biotinylated protein was mixed with 5 μl of 10 nM of each erythrocyte surface protein in reaction buffer (100 mM Tris-HCL [pH 8.0], 0.01% [v/v] Tween-20 and 0.1 mg/ml [w/v] bovine serum albumin) and incubated for 1 h at 26 °C to form a protein-protein complex. Subsequently, a 10 μl suspension of streptavidin-coated donor-bead and anti-GST acceptor-bead (PerkinElmer) 1:1 (v/v) mixture in the reaction buffer was added to a final concentration of 15 μg/ml of both beads. The mixture was incubated at 26 °C for 12 h in the dark to allow the donor- and acceptor-beads to optimally bind to biotin and GST, respectively. Upon illumination of this complex, a luminescence signal at 620 nm was detected using an EnVision plate reader (PerkinElmer) and the result was expressed as AlphaScreen counts. HisGST was used to set the background and was subtracted from each sample signal.
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2

FCGR2B2-EGFP Binding to Human IgG

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The binding property of FCGR2B2-EGFP for human IgG was analyzed by enzyme-linked immunosorbent assay (ELISA), as previously described (14 (link),15 (link)). Rabbit anti-human FCGR2B antibody was biotinylated using a Biotin Labeling kit-NH2 (Dojindo Molecular Technologies, Kumamoto, Japan). MaxiSorp 96 well microtiter plates (Nunc, Roskilde, Denmark) were coated with 100 μg/ml human IgG (catalog no. 31154; Thermo Fisher Scientific Pierce, Waltham, MA, USA) at 4°C overnight. The plates were blocked with 5% non-fat dry milk in PBS containing 0.05% Tween-20 (PBST) for 1 h at room temperature and then incubated with serially diluted cell lysate samples from the transfected HUVECs for 2 h at 37°C. After washing with Tween-20-containing PBS, the plates were incubated with the biotinylated anti-FCGR2B antibody at 1:1,000 dilutions for 2 h at 37°C. High Sensitivity Streptavidin HRP conjugates at 1:10,000 dilutions (catalog no. 21130; Thermo Fisher Scientific Pierce) was added to each well followed by incubation for 1 h at 37°C. ELISA was developed using 1-Step Ultra TMB-ELISA (Thermo Fisher Scientific Pierce,). The absorbance of each well was measured at 450 nm using an iMark Microplate Absorbance Reader (Bio-Rad).
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3

Rapid Antibody Production and Labeling

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Amplification of immunoglobulin heavy and light chain variable genes by rapid amplification of 5’ cDNA ends PCR was performed as previously described [26 (link)]. High-throughput production of recombinant antibodies was performed by TS-jPCR as previously described [26 (link)]. Briefly, cognate pairs of linear immunoglobulin heavy and light chain genes were cotransfected into HEK293 cells, and the cell culture supernatant was used for enzyme-linked immunosorbent assay (ELISA) and cell ELISA four days after transfection. For large-scale antibody production, immunoglobulin heavy and light chain genes were inserted into pET-IgG and pET-IgK vectors by target-selective homologous recombination cloning as described previously [27 (link)]. Transient transfection of the plasmids into CHO-S cells was performed with the CHOgro High Yield Expression System (Takara Bio). Recombinant mAbs were purified from the CHO cell culture medium by using MabCaptureC™ Protein A chromatography resin (ThermoFisher Scientific). The purified antibodies were labeled with either alkaline phosphatase or biotin by using Alkaline Phosphatase Labeling Kit-SH or Biotin Labeling Kit -NH2 according to the manufacturer’s instructions, respectively (Dojindo).
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4

Quantifying PfRipr's Erythrocyte Interactome

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Interaction between PfRipr and 13 erythrocyte surface proteins was quantified by AlphaScreen as reported40 (link). Briefly, reactions were carried out in 20 µl of reaction volume per well in 384-well OptiPlate microtiter plates (PerkinElmer). First, affinity-purified Ecto-PfRipr recombinant protein was biotinylated using a Biotin Labeling Kit-NH2 (Dojindo Molecular Technologies, Kumamoto, Japan) according to the manufacturer’s instruction. Secondly, 5 µl of 10 nM biotinylated protein was mixed with 5 µl of 10 nM for each erythrocyte surface protein in reaction buffer (100 mM Tris-HCL [pH 8.0], 0.01% [v/v] Tween-20 and 0.1 mg/ml [w/v] bovine serum albumin), and incubated for 1 h at 26 °C to form a protein-protein complex. Subsequently, a 10 µl suspension of streptavidin-coated donor-beads and anti-GST acceptor-beads (PerkinElmer) mixture in 1:1 (v/v) in the reaction buffer was added to a final concentration of 15 µg/ml of both beads. The mixture was incubated at 26 °C for 12 h in the dark to allow the donor- and acceptor-beads to optimally bind to biotin and GST, respectively. Upon illumination of this complex, a luminescence signal at 620 nm was detected by the EnVision plate reader (PerkinElmer) and the results were expressed as AlphaScreen counts. GST tagged Rh5, known to interact with PfRipr, was included as a positive control and His-GST as a negative control.
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5

Enrichment and Isolation of Pluripotent Cells

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Recombinant BC2LCN lectin (rBC2LCN) (FUJIFILM Wako Pure Chemical Corporation) was labelled with a Biotin Labeling Kit-NH2 (Dojindo). Biotin-conjugated rBC2LCN (1–100 μg) or biotin-conjugated BSA were incubated with 50 μL of Dynabeads M−280 streptavidin (Thermo Fisher Scientific, Waltham, MA, USA) in 1 ml of MACS buffer [0.5% bovine serum albumin (BSA) and 2 mM EDTA in PBS] on a rotator for 30 min at room temperature. After incubation, the beads were rinsed twice with MACS buffer (rBC2LCN-magnetic bead and BSA-magnetic bead).
Cells (hESCs and hiPSCs) were dissociated with ESGRO Complete Accutase (Merck Millipore, Billerica, MA, USA) and mixed with HDF in a ratio of 1:1. HDF cells were pre-marked with a CellTrace Violet cell proliferation kit according to the manufacturer's protocol (Thermo Fisher Scientific) or with mitomycin C treated for proliferation inhibition, depending on the following analysis. A total of 2 × 106 mixed cells were incubated with 50 μL of the rBC2LCN-magnetic bead, BSA-magnetic bead or magnetic bead alone for 30 min at 4 °C in 1 ml of MACS buffer. The suspensions were placed in a DynaMag magnet (Thermo Fisher Scientific) for 2 min, and the supernatant with untouched cells was collected for flow cytometry, gene expression analysis and teratoma formation assay.
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6

Quantitative ELISA for Phospho-CSE1L

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Anti-CSE1L (H2) antibody-coated 96-well plates (Costar) were blocked with 5% BSA in TBS (Tris-buffered saline) for 1 h. The wells were washed with TBST (0.05% Tween 20 in TBS) and then incubated with serum samples (sixfold dilution with TBS) for 1 h. After being washed with TBST, the wells were incubated with biotin-conjugated anti-phospho-CSE1L antibodies for 1 h. The biotin-conjugated anti-phospho-CSE1L antibodies were prepared by biotinylating anti-phospho-CSE1L antibodies using the Biotin Labeling Kit-NH2 (Dojindo Laboratories, Kumamoto, Japan). The wells were then washed with TBST, reacted with streptavidin-conjugated horseradish peroxidase (R&D Systems, Minneapolis, MN, USA), and followed by incubation with the substrate reagent (R&D Systems). For calibration, two blank wells containing TBST were used as the background value, and two wells that were not coated with anti-phospho-CSE1L antibodies but reacted with all other ELISA reagents were used as control wells. The absorbance at 450 nm was measured within 20 min following the reaction by using a Thermo Multiskan EX microplate photometer (Thermo Fisher Scientific, Waltham, MA, USA). Each sample was assayed two times.
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7

Antibody Production and Characterization

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Rabbit anti-Siwi, anti-BmAgo3, and anti-Mael antibodies were described previously (Chung et al. 2021 (link); Izumi et al. 2020 (link)). Rabbit anti-SpnE antibody was generated by immunizing amino-terminally His-tagged recombinant SpnE (aa 2–124). Anti-FLAG (M2, Sigma), anti-HA (3F10, Roche), anti-α-Tubulin (B-5-1-2, Sigma) antibodies were purchased. For Supplemental Figure 2, the anti-BmAgo3 antibody was biotinylated using the Biotin Labeling Kit-NH2 (DOJINDO). Chemiluminescence was induced by Luminata Forte Western HRP Substrate (Millipore) and images were acquired by Amersham Imager 600 (GE Healthcare).
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8

Azide-Unit Functionalized Water-Soluble Photopolymer for Influenza Detection

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An azide-unit pendant water-soluble
photopolymer (AWP, 6%) was purchased from Toyo Gosei Co., Ltd. (Tokyo,
Japan). SA was purchased from ProSpec-Tany TechnoGene Ltd. (East Brunswick,
NJ). Bovine serum albumin (BSA), skim milk powder, hydrochloric acid,
and magnesium chloride hexahydrate were purchased from FUJIFILM Wako
Pure Chemical Corporation (Osaka, Japan). Trizma base and Tween 20
were purchased from Sigma-Aldrich Co. LLC (St. Louis, MO). Phosphate-buffered
saline (PBS; pH 7.4) solution and 9H-(1,3-dichloro-9,9-dimethylacridin-2-one-7-yl)
phosphate (DDAO phosphate) diammonium salt were purchased from Thermo
Fisher Scientific, Inc. (Waltham, MA). Mouse anti-H5N1 HA monoclonal
antibody, recombinant H5N1 HA, recombinant H1N1 HA, recombinant H3N2
HA, recombinant H7N9 HA, and rabbit anti-avian influenza A HA polyclonal
antibody were purchased from Sino Biological, Inc. (Beijing, China).
DyLight 650-labeled goat antirabbit polyclonal antibody and alkaline
phosphatase-labeled goat antirabbit polyclonal antibody were purchased
from Abcam (Cambridge, MA). The biotin labeling kit-NH2 was purchased from Dojindo Molecular Technologies, Inc. (Kumamoto,
Japan).
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9

Binding of Biotin-Labeled Casein to Basophils

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We aimed to confirm that purified αS1‐casein was bound to cell surface sIgE and activated the PS‐basophils. Purified αS1‐casein was labeled with biotin using the Biotin Labeling Kit‐NH2 (Dojindo Molecular Technologies, Kumamoto, Japan). Biotin‐labeled αS1‐casein was added to PS‐basophil suspension and incubated on ice for 30 minutes. After washing, anti‐human IgE‐PE (BioLegend, San Diego, CA), CRA1 (anti‐human FcεRIα‐PE/Cy7, detecting non‐IgE‐binding site on FcεRIα; BioLegend), CRA2 (anti‐human FcεRIα‐FITC, detecting IgE‐binding site on FcεRIα; BioAcademia, Osaka, Japan), anti‐human CD3‐APC/Alexa Fluor 750 (Beckman Coulter), anti‐human CRTH2‐PerCP/Cy5.5 (BioLegend), and streptavidin‐Brilliant violet 421 (BioLegend) were added. The reaction was allowed to proceed for 30 minutes in the dark at 4°C and was stopped by adding the stop solution. After adding Fix and Lyse solution and washing, cells were resuspended in 0.5 mL PBS containing 0.1% formaldehyde and analyzed using the flow cytometer.
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10

ELISA for S100A8/A9 Heterodimer

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Two monoclonal antibodies (mAb2H6 and mAb10D11) specific for r-S100A8 and r-S100A9, respectively, were used to establish an ELISA for the heterodimer, in which the two mAbs were provided from Yamasa Corporation (Chiba, Japan). Horseradish Peroxidase (HRP) Labeling Kit-SH and Biotin Labeling Kit-NH2 were purchased from DOJINDO LABORATORIES (Kumamoto, Japan). ELISA kits for inflammatory biomarkers, such as CRP, IL-6, TNF-α, and IL-1β, were purchased from COSMO BIO Co. Ltd. (Tokyo, Japan) to quantitatively determine their serum concentrations in rats. Dextran sulfate sodium salt (DSS, MW: 36000–50000, MP Biochemicals) was purchased from Wako Pure Chemical Industries, Ltd. (Tokyo, Japan). Tacrolimus was provided by Astellas Pharmacology, Inc (Tokyo, Japan). Clinical Thioglycollate Medium (E-MC17) was obtained from EIKEN Chemical Co. Ltd. (Tokyo, Japan). LPS from Escherichia coli (E. coli) was purchased from Sigma-Aldrich Co. LLC (Tokyo, Japan). VECTASHIELD Mounting Medium containing 4′,6-Diamidino-2-phenylindole, dihydrochloride (DAPI), streptavidin (STA)-fluorescein 5-isothiocyanate (FITC); and anti-mouse IgG (horse)-Texas Red (TR) conjugates were obtained from Vector Inc. (Burlingame, CA). All other reagents were obtained from Wakenyaku Co. Ltd. (Kyoto, Japan).
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