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Precast 4 20 polyacrylamide gels

Manufactured by Bio-Rad

Precast 4-20% polyacrylamide gels are a type of laboratory equipment used for protein separation and analysis. These gels provide a consistent and uniform matrix for electrophoretic separation of proteins based on their molecular weight. The 4-20% gradient allows for the separation of a wide range of protein sizes.

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4 protocols using precast 4 20 polyacrylamide gels

1

Protein Profiling via In-Gel Digestion

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For each protein sample (8‐h noninfected, 8‐h infected, 24‐h noninfected and 24‐h infected), 50 μg was loaded onto pre‐cast 4–20% polyacrylamide gels (Bio‐Rad) and samples were run two‐thirds of the way down the gel. Each lane was cut into eight equally sized pieces and each section cut into 1‐mm3 cubes. Gel pieces were washed with 100 mM NH4HCO3 and acetonitrile before reduction and alkylation with 10 mM DTT and 55 mM iodoacetamide, respectively. Proteins were subject to in‐gel digestion with sequencing‐grade trypsin (Roche) and digestions were carried out at 37°C overnight. The resulting peptides were cleaned using a C18 (POROS R2; Applied Biosystems, Waltham, MA, USA) column. Clean peptide samples were dried down to c. 10 μl using a vacuum centrifuge before being re‐adjusted to a final volume of 30 μl with 0.1% trifluoroacetic acid.
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2

Western Blotting of Brain Proteins

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Input and pulldown gel samples were bath sonicated, boiled for 10 min, and separated by SDS-PAGE on precast 4-20% polyacrylamide gels (BioRad). Proteins were then transferred on PVDF membranes using a semi-dry transfer apparatus. For dot-blotting, each spot was added with 5 ug of brain lysate protein on a nitrocellulose membrane and allowed to air-dry for 1.5 hours before blocking. Membranes were blocked for 1 h at room temperature using OneBlock Western-FL Blocking Buffer (Genesee Scientific) after which the membranes were incubated with primary antibodies (Anti-O-GlcNAc RL2 1:3,000, Thermo MA1-072; Anti-Hsp27 1:3,000, Cell Signaling Technology #95357; Anti-αBC 1:3,000, Cell Signaling Technology #45584) in blocking buffer at 4 °C for 16 h. Membranes were washed with TBST (137 mM NaCl, 20 mM Tris, 0.1% Tween-20, pH 7.6, Cell Signaling Technology) 3 times for 10 min each, followed by incubation with HRP-conjugated anti-rabbit or anti-mouse secondary antibodies (1:10,000, Jackson ImmunoResearch 711-035-152 or 715-035-150) in blocking buffer. After 3x10 min washing in TBST, membranes were developed with Western ECL Substrates (Biorad) and imaged using a ChemiDoc XRS+ Imager (Bio-Rad).
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3

Western Blotting of Brain Proteins

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Input and pulldown gel samples were bath sonicated, boiled for 10 min, and separated by SDS-PAGE on precast 4-20% polyacrylamide gels (BioRad). Proteins were then transferred on PVDF membranes using a semi-dry transfer apparatus. For dot-blotting, each spot was added with 5 ug of brain lysate protein on a nitrocellulose membrane and allowed to air-dry for 1.5 hours before blocking. Membranes were blocked for 1 h at room temperature using OneBlock Western-FL Blocking Buffer (Genesee Scientific) after which the membranes were incubated with primary antibodies (Anti-O-GlcNAc RL2 1:3,000, Thermo MA1-072; Anti-Hsp27 1:3,000, Cell Signaling Technology #95357; Anti-αBC 1:3,000, Cell Signaling Technology #45584) in blocking buffer at 4 °C for 16 h. Membranes were washed with TBST (137 mM NaCl, 20 mM Tris, 0.1% Tween-20, pH 7.6, Cell Signaling Technology) 3 times for 10 min each, followed by incubation with HRP-conjugated anti-rabbit or anti-mouse secondary antibodies (1:10,000, Jackson ImmunoResearch 711-035-152 or 715-035-150) in blocking buffer. After 3x10 min washing in TBST, membranes were developed with Western ECL Substrates (Biorad) and imaged using a ChemiDoc XRS+ Imager (Bio-Rad).
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4

Western Blot Protein Detection

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Lysates containing equal amount of protein were run on pre-cast 4-20% polyacrylamide gels (Bio-Rad, Hercules, CA) followed by transfer onto Nitrocellulose blotting membrane (GE Healthcare, UK) using the wet-transfer method. The membranes were then blocked with PBS-T containing 5% milk, followed by overnight incubation with specific antibody in 1X PBS containing 5% milk. After multiple washing with 1X PBS-T, the membrane was incubated for 1 hr with HRP-conjugated secondary from the appropriate species. After multiple washes with 1X PBS-T, the membrane was exposed to SuperSignal® West Femto Maximum Sensitivity Substrate (ThermoScientific, Waltham, MA) per manufacturer’s instructions, followed by autoradiography.
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