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Dq red bsa

Manufactured by Thermo Fisher Scientific
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DQ Red BSA is a bovine serum albumin (BSA) solution that is pre-labeled with a red fluorescent dye. It is used in various applications, such as protein quantitation, Western blotting, and immunoassays, where a red-colored, fluorescent protein marker is required.

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84 protocols using dq red bsa

1

Analyzing Cellular Degradation Ability

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For degradation ability analysis, cells were loaded with DQ-Red BSA (20 μg/ml, Invitrogen) for 1 h at 37°C and then incubated with fresh culture medium without DQ-Red BSA for another 1 h. After incubation, the cells were washed with PBS and fixed with 4% paraformaldehyde (PFA) immediately. Imaging was performed with a Plan-APOCHROMAT 100×/1.4 Oil DIC oil immersion objective on an LSM980 confocal microscope (Zeiss).
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2

Fluorogenic Assays for Phagosomal Dynamics

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The fluorogenic assays for phagosomal proteolysis and acidification were adapted from Russell laboratory (Yates et al, 2009 (link)). Cells were seeded into a 96 well plate at 1 × 105 cells per ml 24 h prior to the experiment. Carboxylate silica beads (3 μm, Kisker Biotech) were conjugated with DQ red BSA (Molecular Probes) or pHrodo (Molecular Probes) and incubated for 3 min at 1:100 in binding buffer (1% FBS in PBS pH 7.5) with seeded macrophages at 37°C. Solution was replaced with warm binding buffer and cells were immediately measured at 37°C. Real‐time fluorescence was measured using a SpectraMax Gemini EM Fluorescence Microplate Reader (Molecular Devices), set as maximal readings per well to allow reading time intervals of 2 min. The excitation/emission wavelengths were 590/620 nm (DQ red BSA), 650/665 nm (Alexa Fluor 640), 560/585 nm (pHrodo) for the proteolysis or acidification assay and measured in relative fluorescence units (RFU). Plots were generated from the ratios of signal/control fluorescence. Error bars were generated from standard error of the mean of 6 replicates.
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3

Bovine Lactoferrin Purification and Labeling

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The bioactive Lf from bovine whey was kindly supplied by the Tatua Cooperative Dairy Company Ltd (New Zealand). Poly-L-Lysine hydrochloride (PLL, Mw 15,000–30,000), BSA lyophilized powder (≥96%), TA (ACS grade), BSA conjugated with fluorescein isothiocyanate (BSA/FITC), bile salts (for microbiology), pancreatin from porcine pancreas (≥100 USP U/mg), pepsin from porcine gastric mucosa (3802 U/mg), mini protease inhibitor cocktail cOmplete™, hydrochloric acid, calcium chloride dehydrate, sodium bicarbonate, sodium chloride, sodium hydroxide, acetonitrile (for HPLC, ≥99.9%) were purchased from Sigma-Aldrich. Anhydrous sodium carbonate was purchased from Alfa Aesar. 0.1% aqueous solution of trifluoroacetic acid (TFA, LC/MS grade, ≥99.99%) was purchased from VWR Chemicals. DQ™ Red BSA was purchased from Molecular Probes Inc, USA. The bovine lactoferrin ELISA kit was purchased from Bethyl Laboratories, Inc., USA. Cyanine 7 N-hydroxysuccinimide ester (Cy7-NHS) was purchased from Lumiprobe Corporation, USA. Cy7-labelled Lf (Cy7-Lf) has been prepared according to a standard protocol provided by Lumiprobe Co and purified by dialysis. All chemicals were used as received without further purification. Deionized (DI) water (specific resistivity higher than 18.2 MΩcm) from Milli-Q plus 185 (Millipore) water purification system was used to make all solutions.
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4

Visualizing Intracellular Trafficking

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Cells were pulsed with DQ-Red BSA (Molecular Probes, D-12051) for 1 hr and chased for 4 hr before imaging live cells using Quorum spinning disc confocal microscopy.
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5

Visualizing Lysosomal Proteolysis with DQ-Red BSA

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Lysosomal-dependent proteolysis was visualized with DQ-Red BSA (Molecular Probes/Invitrogen, D-12051) at a concentration of 10 μg/ml for 0.5~1 h (37 °C, 5% CO2). The cells were then washed 3 times with PBS before being treated with 5 μM IMB-6G for 12 h. Then cells were observed using confocal microscopy (Zeiss, LSM710, Germany).
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6

Fluorescent Lysosomal Proteolysis Assay

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Lysosome-dependent proteolytic activity was measured using DQ™ Red BSA (Molecular Probes, Eugene, OR, USA). The degradation of DQ™ Red BSA by hydrolases in active endo-lysosomes results in highly red fluorescent products that can be observed by confocal microscopy29 (link). Cells were seeded onto Lab-TEKTM II Chamber Slides (Nalge Nunc International, Rochester, NY) precoated with 0.2% gelatin overnight. Cells then were exposed to DEP for 12 h. After washing with PBS, cells were further incubated with DQ™ Red BSA (10 μg/ml) for 4 h and fixed in 4% paraformaldehyde for 10 min. After washing with PBS, slides were mounted in ProLong® Gold antifade reagent with DAPI (Invitrogen) and immediately analyzed under confocal microscopy (FVS3000-ORS, Olympus Corporation, Tokyo, Japan).
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7

DQ Red-BSA Trafficking Dynamics

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Cells were loaded with DQ Red-BSA (Molecular Probes) at a working concentration of 10 µg/ml in 1% FBS culture medium for 1 h and 6 h at 37°C and 5% CO2. In the case of rescue of DQ Red-BSA trafficking, the siRNA-resistant construct of interest was transfected after 50–55 h of siRNA treatment of cells, followed by DQ Red-BSA uptake after 10–12 h of transfection. The cells were fixed in 4% PFA made in PBS (pH 7.4) and analyzed under a confocal microscope. Fold change in total fluorescence intensity of DQ-BSA fluorescence from 1 h to 6 h and the number of DQ Red-BSA spots were quantified using ImageJ software.
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8

Lysosomal Degradation Assay with DQ-BSA

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After 2h starvation, serum-free DMEM medium was supplemented with 0.1 mg/mL DQ Red BSA (Molecular Probes) and cells incubated for 4h and treated with either vehicle or 50 μM Chloroquine (Sigma). For Figure 3I, Empty Vector KCPTEN cells were cultured in 5% EAAs ± 250nM Torin1 ± 3% BSA for 24 hours prior to the DQ-BSA assay. RICTOR-KO KCPTEN cells were cultured in 5% EAAs without BSA. Cells were rinsed with ice-cold PBS and fixed with 3.7% paraformaldehyde for 15 min. Alexa Fluor-488 Phalloidin was again used for F-actin and DAPI for nuclear visualization as described above and Z stack images were obtained with an Olympus confocal FV1000 microscope using standard settings. Quantification was carried out as described above.
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9

Lysosomal Proteolysis Quantification

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Lysosomal-dependent proteolysis was determined by DQ-Red BSA (Molecular Probes/Invitrogen, D-12,051). The cells were incubated with DQ-Red BSA at a concentration of 10 µg/ml for 1 h (37 °C, 5% CO2) and then were washed 3 times with DPBS. After 10 h, the cells were observed using a confocal microscopy (Zeiss, LSM710, Germany). The fluorescence intensity was measured by Image J. The values were normalized to the control group.
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10

Antibody Reagents for Autophagy Research

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The AGS3 polyclonal antibody has been described previously and was kindly provided Dr. D. Ma (15 (link)). The commercial antibodies used as follows: LC3B antibody (L7543), β-actin-peroxidase antibody (A3854) [Sigma-Aldrich]; LAMP-1 (1D4B), LAMP-2 (H4B4), and CD-63/LAMP-3 (H5C6) antibodies [Developmental Studies Hybridoma Bank]; TGN-46 (ab16059) and LAMP-1 (ab25630) [Abcam]; cathepsin D (sc-6486) [Santa Cruz]; Akt (11E7), phospho-Akt (Ser473) (D9E), TSC2 (D93F12), phospho-TSC2 (Thr 1462) (5B12), 4E-BP1 (53H11), phospho-4E-BP1 (Thr37/46) (236B4), p70 S6 kinase (49D7), phospho-p70 S6 kinase (Thr389) (108D2) and GAPDH (14C10) [Cell Signaling]; and TFEB antibody (A303-672A) [Bethyl Laboratories]. The following reagents were used phorbol12-myristate 13-acetate (PMA) [Sigma-Aldrich]; bafilomycin A1 and glycogen synthase kinase 3 (GSK3) inhibitor VIII [Calbiochem]; G418 sulfate [Cellgro]; lipopolysaccharide (LPS) [Enzo Life Sciences]; Staphylococcus aureus (Wood strain without protein A) BioParticles, Escherichia coli (K-12 strain) BioParticles and DQ-Red BSA [Molecular Probes].
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