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Odyssey fluorescence imager

Manufactured by LI COR
Sourced in United States

The Odyssey fluorescence imager is a laboratory instrument designed for high-performance fluorescence detection and imaging. It utilizes advanced technology to capture and analyze fluorescent signals from a variety of samples. The core function of the Odyssey is to provide accurate and sensitive quantification of fluorescent signals, making it a versatile tool for various applications in life science research.

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10 protocols using odyssey fluorescence imager

1

Phospho-Proteomics of Activated T-cells

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T-cells from co-culture experiments (1 × 105 T-cells seeded) were harvested with one part of 1× PBS and one part of Novex® buffer (Thermo Fisher Scientific) containing 3% dl-dithiothreitol (Sigma-Aldrich). Samples were run on 10% SDS PAGE gels and then blotted on an Amersham protan nitrocellulose transfer membrane (Sigma-Aldrich). Phospho-protein phosphatase 2A (pPP2A) (1:7,000, clone E155; Abcam, Cambridge, UK), protein phosphatase 2A (PP2A) (1:1,000), pAkt (Ser 473, 1:2,000, clone D9E), pAkt (Thr 308, 1:1,000, clone C31E5E), Akt (1:1,000, clone C67E7, all Cell signaling technology, Danvers, MA, USA), and vinculin (clone hVIN-1, 1:40,000 Sigma-Aldrich) protein expressions were determined by immunoblotting of CD3+ T-cells at intervals up to 96 h after allogeneic stimulation with DCs. Western blots for pPP2A and pAKt (Ser473 and Thr308) were developed by chemiluminescence imaging using the Super signal west femto maximum sensitivity substrate (Thermo Fisher Scientific) and chemiluminescent detection films (Sigma-Aldrich). Western blots for PP2A, Akt, and vinculin were developed by fluorescence imaging using Goat-anti-mouse IgG Dylight 800 and Goat-anti-rabbit IgG Dylight 800 (both Thermo Scientific) on an Odyssey Fluorescence imager (Licor, Licoln, NE, USA). Western blots were analyzed by densitometry using the ImageJ software.
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2

Fluorescent Nanoparticle Tumor Imaging

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Male mice bearing subcutaneous prostate tumors were injected intravenously with either FH(ICG) (2.2 mg ICG/kg, 7 mg iron [Fe]/kg) or ICG (2.2 mg ICG/kg). At 6, 24 or 48 h post-injection, mice were euthanized and their brains, hearts, lungs, liver, kidneys, spleens and tumors were collected. Fluorescence images of these organs were taken using an Odyssey fluorescence imager (Li-COR, Lincoln, NE), and the total fluorescence in each organ was quantified. The mean fluorescence per unit area of the organs was compared between treatments for each timepoint. In addition, mice bearing subcutaneous prostate tumors were injected with ICG or FH(ICG) and imaged 48h post-injection using an In Vivo Imaging System (IVIS, PerkinElmer, Waltham, MA) or a Synchronized near-InfraRed Imaging System (SIRIS, developed in-house). Similar experiments were performed with a higher dose of FH(ICG) (4.4 mg ICG/kg, 14 mg iron [Fe]/kg) and imaging after 5 days.
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3

Erythrocyte Ghost Preparation and Heptamer Formation

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Erythrocyte ghosts were prepared as described previously (20 (link)) from rabbit blood (Pel-Freez). Briefly, 5 ml of packed RBC were washed twice in 0.9% NaCl and incubated in 90 ml of lysis buffer (5 mM Na-phosphate buffer, 1 mM EDTA, pH 7.4) overnight at 4°C under constant stirring. Ghosts were obtained after centrifugation at 15,000 × g for 20 min, washed 3 times with lysis buffer, washed one time in phosphate-buffered saline (PBS), and resuspended in PBS to an OD600 of 0.2. Heptamers were formed by incubating 5 μl ghosts with purified AT proteins (0.5 μg) and PBS in a final volume of 21 μl for 45 min at 37°C. Samples were then solubilized in 7 μl of Bolt LDS sample buffer (Invitrogen) and incubated for 5 min at room temperature, and 13 μl was run on 4 to 12% Bolt morpholinepropanesulfonic acid (MOPS) SDS gel (Life Technologies). The separated proteins were transferred to nitrocellulose membrane in Bolt transfer buffer (Invitrogen) with 10% methanol overnight at 15 V, blocked with Odyssey blocking buffer (LI-COR) for 1 h, and probed with rabbit anti-AT IgG (2 μg/ml) for 2 h at room temperature. The AT bands were detected after 1 h of incubation with IRDye 680RD-conjugated donkey anti-rabbit IgG (LI-COR) by an Odyssey fluorescence imager (LI-COR). Band intensities were calculated with Odyssey Image Studio Lite software.
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4

Western Blot Protocol with Detailed Instructions

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Unless otherwise noted, SDS–PAGE was run with Novex 12% Bis-Tris gel (Invitrogen) in MES running buffer (Invitrogen) at 200 V for 60 min following the manufacturer’s instructions. Protein bands were transferred to 0.2-µm nitrocellulose membranes (Bio-Rad) using wet-tank transfer apparatus (Bio-Rad Criterion Blotter) in 1× TOWBIN buffer with 10% methanol at 75 V for 45 min. Membranes were blocked in 5% Bovine serum albumin (BSA) in Tris-buffered saline supplemented with Tween-20 (20 mM Tris, 150 mM NaCl, 0.1% Tween-20, pH 7.6, hereafter referred to as TBST) for 1 h at 23 °C. Primary antibody binding was performed with the indicated antibodies diluted in 5% BSA–TBST at 4 °C for at least 16 h. After washing the membrane three times with TBST (5 min each wash), secondary antibodies (goat anti-rabbit IgG-IRDye 800, 1:5,000, and goat anti-mouse IgG-IRDye 680, 1:5,000, Li-COR) were added as solutions in 5% skim milk–TBST at the dilutions recommended by the manufacturer. Secondary antibody binding was allowed to proceed for 1 h at 23 °C. The membrane was washed three times with TBST (5 min each wash) and imaged on a Li-COR Odyssey fluorescence imager.
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5

Monitoring Brain Tumor Drug Distribution

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Brain tumor-bearing mice were intravenously injected with HMC-FMX (1 mg
HMC and 4 mg iron/kg). At 3, 24, 48 and 168 h post-injection, mice were
euthanized and then imaged using the SIRIS. Following whole body imaging, mice
brains, hearts, lungs, livers, kidneys and spleens were harvested and imaged to
visualized fluorescence distribution using SIRIS. In addition, fluorescence
images of these organs were taken using an Odyssey fluorescence imager (Li-COR,
Lincoln, NE) to quantify the total fluorescence in each organ for each
timepoint. In these images, the fluorescence of brain tumors was quantified
separately from the normal brain. A 50 μl blood sample was also collected
from the euthanized mice. To quantify the amount of HMC-FMX in circulation at
each time point, blood samples were diluted 20-fold with PBS and imaged on the
Odyssey imager.
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6

Mkc1p Phosphorylation Monitoring in Yeast

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For the Mkc1p phosphorylation blot, overnight cultures were diluted in fresh YEPD media to an OD600 of 0.3 and grown until they reached an OD600 of 1 at 37°C and 200 rpm. Samples were treated with 5 μg ml−1 tunicamycin for 2 hr before they were recovered. The procedures used for cell collection, lysis, protein extraction, fractionation by SDS-PAGE and transfer to nitrocellulose membranes have been previously described (Martín, Arroyo, Sánchez, Molina, & Nombela, 1993 (link)). Anti-phosphop44/42 MAP kinase (Thr202/Tyr204) antibody (Anti-p42–44-P) (Cell Signalling Technology, Inc.) was used to detect dually phosphorylated Mkc1 and Cek1 MAPKs, and polyclonal anti-Mkc1 antibodies were used for Mkc1 detection (Federico Navarro-García, Eisman, Fiuza, Nombela, & Pla, 2005 (link)). Blot imaging was done by using an Odyssey fluorescence imager (LI-COR) and quantified using Image Studio Lite (LI-COR).
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7

Quantifying Fluorescence of FH(ICG) Complexes

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FH(ICG) with an added ICG amount of 1, 2, 5, 10 and 20 mg/ml were dissolved at a 3 mM iron concentration in either PBS or 1:1 PBS:DMSO to mimic FH(ICG) or released dye from FH(ICG), respectively. The fluorescence of these samples was measured using an Odyssey fluorescence imager (Li-COR, Lincoln, NE). For each sample, the change in fluorescence and fluorescence activation were calculated. The change in fluorescence was defined as the difference in fluorescence between released ICG and FH(ICG), while the fluorescence activation was defined as the fluorescence of released dye divided by the fluorescence of the FH(ICG). For these parameters, the error was propagated from each fluorescence measurement.
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8

Mkc1p Phosphorylation Blotting Protocol

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For the Mkc1p phosphorylation blot, overnight cultures were diluted in fresh YEPD media to an OD600 of 0.3 and grown until they reached an OD600 of 1 at 37°C and 200 rpm. Samples were treated with 5 μg ml−1 tunicamycin for 2 hr before they were recovered. The procedures used for cell collection, lysis, protein extraction, fractionation by SDS‐PAGE and transfer to nitrocellulose membranes have been previously described (Martín, Arroyo, Sánchez, Molina, & Nombela, 1993). Anti‐phospho‐p44/42 MAP kinase (Thr202/Tyr204) antibody (Anti‐p42‐44‐P) (Cell Signalling Technology, Inc.) was used to detect dually phosphorylated Mkc1 and Cek1 MAPKs, and polyclonal anti‐Mkc1 antibodies were used for Mkc1 detection (Federico Navarro‐García, Eisman, Fiuza, Nombela, & Pla, 2005). Blot imaging was done by using an Odyssey fluorescence imager (LI‐COR) and quantified using Image Studio Lite (LI‐COR).
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9

Western Blotting Protocol for Protein Analysis

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Unless otherwise noted, SDS–PAGE was run with Novex 4–12% Bis-Tris gel (Invitrogen) in MES running buffer (Invitrogen) at 200 V for 40 min following the manufacturer’s instructions. Protein bands were transferred onto 0.45-µm nitrocellulose membranes (Bio-Rad) using a wet-tank transfer apparatus (Bio-Rad Criterion Blotter) in 1× TOWBIN buffer with 10% methanol at 75 V for 45 min. Membranes were blocked in 5% BSA–TBST for 1 h at 23 °C. Primary antibody binding was performed with the indicated antibodies diluted in 5% BSA–TBST at 4 °C for at least 16 h. After washing the membrane three times with TBST (5 min for each wash), secondary antibodies (goat anti-rabbit IgG-IRDye 800 and goat anti-mouse IgG-IRDye 680; Li-COR) were added as solutions in 5% skim milk–TBST at the dilutions recommended by the manufacturer. Secondary antibody binding was allowed to proceed for 1 h at 23 °C. The membrane was washed three times with TBST (5 min for each wash) and imaged on a Li-COR Odyssey fluorescence imager. See Supplementary Table 2 for a full list of antibodies used in this study.
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10

Western Blot Analysis of Mkc1 and Cek1 Phosphorylation

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To examine Mkc1 and Cek1 phosphorylation, protein extracts were prepared from exponentially grown C. albicans strains and these extracts were subjected to western blotting using previously described protocols (Martín, Arroyo, Sánchez, Molina, & Nombela, 1993 (link)). Anti-phospho-p44/p42 MAPK (Thr202/Tyr204) antibody (New England Biolabs) was used to detect dually phosphorylated Mkc1 and Cek1 MAPKs (indicated as Mkc1-P and Cek1-P inFigure 2g); anti-Mkc1 (Román, Nombela, & Pla, 2005 (link)) antibodies were used to detect total Mkc1 (loading control) as indicated in theFigure 2g. Blot imaging was done by using an Odyssey fluorescence imager (LI-COR) and quantified using Image Studio Lite (LI-COR).
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