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Ampfistridentifiler kit

Manufactured by Thermo Fisher Scientific
Sourced in Italy, United States

The AMPFISTRIdentifiler kit is a laboratory equipment product used for DNA profiling and identification. It is designed to amplify and detect specific regions of the human genome, allowing for the analysis of genetic samples. The kit provides the necessary reagents and tools for performing this analysis.

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4 protocols using ampfistridentifiler kit

1

Osteosarcoma 143B cells engineering

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Osteosarcoma 143B Tk cells were purchased (#CRL-8303, ATCC, LGS Standards, Milan, Italy) and cultured at low passages (<50) in in Dulbecco’s modified Eagle medium (DMEM) High Glucose (#ECM0749L, Euroclone, Milan, Italy), supplemented with 10% FBS (#ECS0180L, Euroclone), L-glutamine (2 mM, #ECB3000D, Euroclone), penicillin/streptomycin (1x, #ECB3001D, Euroclone) and uridine (50 µg/mL, #U3003, Sigma-Aldrich, Milan, Italy), in an incubator with a humidified atmosphere at 5% CO2 and 37 °C. The cell origin was authenticated using AMPFISTRIdentifiler kit (#4322288, Applied Biosystems, Monza, Italy) and their STR profile corresponded to their putative background. Genome editing for generation of NDUFS3 knock-out was performed using zinc finger endonucleases purchased from Sigma-Aldrich (#CKOZFND15168, Milan, Italy), according to the manufacturer’s instructions.
Primary human mesenchymal stroma cells (hMSCs) were purchased (#PT-2501, Lonza, Slough, UK) and grown in alpha Minimun Essential Medium (αMEM) (#32571-028, Gibco, Paisley, UK), hMSC-specific FBS (10%) (#12662-029, Gibco, Paisley, UK), penicillin/streptomycin (1x, #ECB3001D, Euroclone), and used at low passages (<5).
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2

Forensic DNA Profiling using AmpFISTR

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The analysis of 15 STRs was performed using the AmpFISTR® Identifiler Kit (Applied Biosystems). The amplified PCR products were analyzed using capillary electrophoresis in an ABI PRISM® 3130 Genetic Analyzer, and genotypes were obtained using allelic ladders provided by the kit and the GeneMapper® software 3.1 (Applied Biosystems).
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3

Family Trio DNA Identification

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DNA samples of the trio of family 1 (the proband and parents) were submitted for human identification (Macrogen). A short tandem repeat multiplex assay was performed with the AmpFISTR®Identifiler® KIT (Applied Biosystems, Foster City, CA, USA) using 15 tetranucleotide repeat loci and the Amelogenin gender-determining marker: all thirteen of the required loci for the Combined DNA Index System and two additional loci (D2S1338 and D19S433). Genotyping data were obtained with the Applied Biosystems® 3730/3730xl DNA Analyzer and analyzed with GeneMapper ID v3.2 (Applied Biosystems).
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4

Osteosarcoma and Colorectal Cancer Cell Culture

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Osteosarcoma 143B Tk cells and colorectal cancer HCT116 cells were used, both carrying wild-type mtDNA. 143B cells were purchased from ATCC (#CRL-8303) and HCT116 cells were a kind gift from Prof. Paolo Pinton from the University of Ferrara. Cell origin was authenticated using AMPFISTRIdentifiler kit (Applied Biosystems #4322288) and their STR profile corresponded to their putative background (Supplementary Fig. 1a). For basal conditions, cells were cultivated in Dulbecco’s modified Eagle medium (DMEM) high glucose (Euroclone #ECM0749L), supplemented with 10% FBS (Euroclone #ECS0180L), L-glutamine (2 mM, Euroclone #ECB3000D), penicillin/streptomycin (1 ×, Euroclone #ECB3001D), and uridine (50 µg mL−1, Sigma-Aldrich #U3003), in an incubator with a humidified atmosphere at 5% CO2 and 37 °C. Cells were replaced by a fresh batch after 15 passages and mycoplasma testing was performed before disposal and after each thawing (approximately every 2 months). Experiments in hypoxia were performed using an Invivo2 300 (Baker Ruskinn) chamber, set at 5% CO2, 37 °C and 1% O2. Where indicated, cells were incubated for 3 h with dimethyloxalylglycine [DMOG (1 mM), Sigma-Aldrich #D3695] or MG132 (10 μM, Sigma-Aldrich #M7449) and 1 h with pimonidazole (100 μM, Hypoxiprobe #70132-50-3).
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