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Mca plaqav dpa rsssr nh2

Manufactured by R&D Systems
Sourced in United States

Mca-PLAQAV-Dpa-RSSSR-NH2 is a synthetic peptide that can be used as a research tool. It has the sequence Mca-PLAQAV-Dpa-RSSSR-NH2. This peptide contains a fluorogenic substrate that can be used to measure protease activity.

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4 protocols using mca plaqav dpa rsssr nh2

1

Gelatin Degradation Assay for MMP Inhibition

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To determine the inhibition of gelatinolytic activity, we used a previously optimized gelatin degradation assay [29 (link)]. Activated MMP-9, activated MMP-2, neutrophil elastase or supernatants of stimulated neutrophils, were incubated with different concentrations of inhibitors and incubated for 30 min at 37 °C. Next, dye-quenched gelatin (DQ™-gelatin, Invitrogen, Carlsbad, CA, USA) was added at a final concentration of 2.5 µg/mL and the increase in fluorescence over time was measured with the CLARIOstar microplate reader (BMG Labtech, Ortenberg, Germany). For other MMPs, the OmniMMP substrate peptide (Mca-PLGL-Dpa-AR-NH2, cat. no. BML-P126-0001, Enzo Life Sciences, Farmingdale, NY, USA) was used at a final concentration of 2.5 µg/mL. For ADAM17 the fluorogenic peptide Mca-PLAQAV-Dpa-RSSSR-NH2 (ES003, R & D systems, Minneapolis, MO, USA) and for neutrophil elastase the fluorogenic substrate MeOSuc-AAPV-AMC (cat. no. 324740, Merck Millipore, Darmstadt, Germany) were used. Proteolytic activity was determined by linear regression of the fluorescence curve and the percentage inhibition was calculated through comparison with the positive control (no inhibitors). When testing supernatants from human neutrophils, the assay was performed in the presence of 20 µM neutrophil elastase inhibitor (Elastase Inhibitor IV, Calbiochem, Darmstadt, Germany).
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2

Enzymatic Toolkit for Molecular Manipulations

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T4 polynucleotide kinase (M0201S), T4 DNA ligase (M0202S), XbaI (R0145L), and XhoI (R0146S) were obtained from New England Biolabs. The enhanced activity SrtA pentamutant was expressed and purified from bacteria using the pET29-eSrtA vector (Addgene, #75144) as previously reported 17 (link). TEV NIa protease was also expressed recombinantly in bacteria using the pTrc-7H-PRO plasmid and purified as described 18 (link). The catalytic domain of ADAM17 (residues 215-477) was isolated after recombinant expression of its precursor form (1-477) with a C-terminal hexahistidine tag using a baculovirus expression system in insect cells. Purification was carried out in the presence of APMA as described 19 (link). Enzyme activity was confirmed in bulk solution using a fluorogenic substrate (Mca-PLAQAV-Dpa-RSSSR-NH2; R&D systems, ES003) 20 (link). Enzymes were snap frozen and stored at −80 C in aliquots before use.
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3

Cytokine and TIMP1 Analysis in CL&P Mice

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For examination of cytokines in the serum of sham and CL&P mice, serum samples collected from five mice at 10 wk after sham or CL&P surgery were pooled, respectively. Cytokines were detected using Proteome Profiler Mouse Cytokine Array Panel A according to the manufacturer’s instructions (R&D).
For measurement of circulating TIMP1 levels, mouse serum was collected at indicated time points and human samples were obtained from septic patients and septic survivors. The amounts of TIMP1 were measured using a mouse or human TIMP1 Quantikine ELISA Kit according to the manufacturer’s instructions (R&D).
For evaluation of the inhibitory activity of TIMP1 on ADAM10, a colorimetric assay was performed to determine ADAM10-mediated cleavage of a fluorogenic peptide substrate Mca-PLAQAV-Dpa-RSSSR-NH2 (R&D) in the presence or absence of TIMP1.
38 μM of recombinant mouse ADAM10 (R&D) was mixed with 20 μM of Mca-PLAQAV-Dpa-RSSSR-NH2 with or without 45 μM recombinant mouse TIMP1 (BioLegend) or 1 μM of the ADAM10 inhibitor GI 254023X (R&D). The reactions were incubated at 37°C for 30 min, and the amount of cleaved peptide substrate was measured by OD405 using a Synergy H1 Hybrid reader (BioTek) and was calculated as the relative unit of ADAM10 proteolytic activity.
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4

Fluorescence-based ADAM10 Activity Assay

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The activity of the truncated sADAM10 and its control, expressed from pET22b-ADAM10_MP and pET22b, respectively, was determined utilizing a fluorescent ADAM10 peptide substrate as previously described (Seegar et al., 2017 (link)). The fluorescently labeled peptide Mca-PLAQAV-Dpa-RSSSR-NH2 (# ES003, R&D Systems) and samples were first diluted in the reaction buffer [25 mM Tris–HCl, pH 9.0, containing 8 μM ZnCl2, and 0.005% (w/v) Brij-35] and equilibrated separately in a 96-well half-area black plate at 37°C for 5 min. Next, the cleavage assay was initiated by mixing 40 μM substrate with the enzyme samples. Fluorescence was measured immediately at 37°C with excitation and emission wavelengths of 320 and 405 nm, respectively. The rate of hydrolysis was defined as the maximal linear slope (R2 > 0.95) of fluorescence versus time and expressed as relative fluorescence units (RFUs)/min. The activity was expressed as the relative increase in activity slope compared to the control wells.
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