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11 protocols using propidium iodide

1

Cell Cycle and Apoptosis Analysis

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Flow cytometry was used to measure the cell cycle and apoptosis of DB and SU-DHL-4 cells.
For the cell cycle determination, the cells were collected and fixed with 70% ethanol at 4°C for 2 h. The cells were then stained with propidium iodide (PI) (Biosharp) at 37°C for 30 min in the dark. Subsequently, the cells were used for flow cytometry to analyze the distribution of cells in each phase.
For apoptosis detection, the cells were collected and stained with Annexin V-FITC at room temperature for 10 min, followed by the incubation with PI for 5 min. Finally, the apoptosis was analyzed with a flow cytometer (ACEA Biosciences Inc., San Diego, CA, USA). Annexin V+PI- cells were considered as early apoptotic cells, and Annexin V+PI+ cells as late apoptotic cells.
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2

Cell Cycle Analysis by Flow Cytometry

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The PTCs in different groups were inoculated into 96-well plate at a density of 1.0×106/mL. The cells were washed with pre-cooled PBS, digested by trypsin, centrifuged at 2000 rpm for 5 min to remove the supernatant. Then, the cells were resuspended in 0.5mL PBS, and 1 mL of pre cooled 70% ethanol was added at 4 °C for 2 hours. The cells were cleaned with PBS and centrifuged again. One hundred microliter RNase A and 500 μL propidium iodide (Biosharp, Beijing, China) were added and incubated at 37 °C for 30 min. Finally, cell cycle distribution was detected by using flow cytometry.
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3

Cell Cycle Analysis and Acidic Vesicular Organelle Staining

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Pre-treated cells were trypsin-digested and centrifuged; The cell pellet was collected, washed with PBS, and fixed in ice-cold 70% ethanol overnight at 4 ℃. Next, the cells were further washed with PBS and stained with 50 µg/ml propidium iodide (Biosharp, China) for 30 min. Distribution of the cell-cycle stages was examined by flow cytometry (Syngene, USA).
Acidic vesicular organelle (AVO) staining.
For AVO staining, 48 h after transfection, cells were further incubated in 2 µg/mL acridine orange (Med Chem Express, USA) containing medium for 20 min. The cells were then imaged using fluorescence microscopy (Nikon, Tokyo, Japan).
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4

Flow Cytometric Analysis of Skin Cells

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For the flow cytometric analysis sorting, skin cells were sorting according to Propidium Iodide (Biosharp, China). The PI-negative cells were immunolabeled with IL-20RB Polyclonal antibody (Proteintech, USA), then immunolabeled with Goat Anti Rabbit IgG(H&L)-Alexa Fluor 488 and PE anti-human CD140b (PDGFRB) Antibody (Biolegend, USA). IL20RB-positive and PDGFRB-positive cells were collected on Beckman MoFloXDP for RT-qPCR analysis of gene expression levels, the result was analyzed by FlowJo.
For flow cytometry, live DCs were immunolabeled with APC-CY7-livedead (Thermo Fisher Scientific, Massachusetts, USA), Brilliant Violet 605™ anti-mouse CD11C (BioLegend, CA), PE anti-mouse CD80 (Thermo Fisher Scientific), FITC anti-mouse CD86 (Thermo Fisher Scientific) at 4°C for 30 min. All cells were detected on Beckman Cytoflex LX and the result was analyzed by FlowJo.
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5

Syringin Induces Apoptosis in Breast Cancer

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The 6-well plates were divided into three groups, and 5.0 × 105 cells (MDA-MB-231 and MCF-7) were added to each well. After adherence, added 2 mL of Syringin with the concentration of 0, 160, 320 µg/mL was added for 48 h, respectively. Then, the cells were fixed with 4% polyoxymethylene for 15 min. After washing with PBS 3 times, 1.0 mL Hoechst 33342 (Beyotime, 8 µg/mL) to each well for 15 min at 37 °C. Then, added 1.0 mL propidium iodide (PI) (Biosharp, 20 µg/mL) to each well at 4 °C for 10 min, and observed the cells with a fluorescence microscope.
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6

Cell Cycle Analysis of LX-2 Cells

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LX-2 cells were preliminary serum-starved for 24 h in DMEM before Sjp40 treatment and synchronized in the G1 phase. And then the medium was replaced with DMEM containing 10% FCS with or without Sjp40 (20 μg/ml). Following stimulation cells were trypsinized and resuspended in 0.3 ml PBS, fixed with 0.7 ml anhydrous ethanol at 4 °C overnight. Fixed cells were resuspended in 0.9 ml PBS and incubated with Rnase A (50 μg/ml; TAKARA, Dalian, China) for 20 min at 37 °C. Cellular DNA was labeled with propidium iodide (50 μg/ml; Biosharp, Hefei, Anhui, China) for 30 min at 4 °C. Samples were filtered to remove cell clumps and analyzed by flow cytometry using a FACSCalibur instrument (BD Biosciences, San Jose, CA, USA).
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7

Cell Cycle Analysis via Flow Cytometry

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For cell cycle analysis, cells were serum-starved for 72 h in DMEM, and then the medium was replaced with DMEM containing 10% FBS. After cultured for indicated time, the cells were harvested and fixed with ethanol at 4°C overnight. Subsequently, the cells were incubated successively with RNase A (Sangon, China) at 37°C for 30 min and propidium iodide (PI, Biosharp, China) on ice for 30 min. Then cell cycle analysis was performed using a flow cytometer from BD Biosciences (USA).
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8

Optimizing Cellular Uptake and Apoptosis Assays

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Clinical indocyanine green (ICG) was purchased from Hangzhou Aoya Biotechnology Co., Ltd. Dopamine hydrochloride was bought from Shanghai Macklin Biochemical Co., Ltd. Methoxy polyethylene glycol amine (mPEG2000-NH2) was purchased from Shanghai Macklin Biochemical Co., Ltd. Tris buffer (hydroxy-methyl) was bought from Shanghai Aladdin Biochemical Technology Co., Ltd. Phosphate-balanced saline (PBS), high glucose Dulbecco's modified essential medium (DMEM), fetal bovine serum (FBS) and trypsin were bought from Shanghai Hyclone Co., Ltd. An Annexin V-FITC apoptosis detection kit was purchased from BD Biosciences Pharmingen Co., Ltd. A Cell Counting Kit-8 (CCK-8), 4′,6-diamidino-2-phenylindole (DAPI), calcein acetomethoxyl ester (calcein AM) and propidium iodide (PI) were bought from Bio-sharp Co., Ltd. Deionized (DI) water was used in all experimental processes.
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9

Synthesis and Characterization of Chromenone Derivative

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SL4 [(E)-1-(5-hydroxy-2,2-dimethyl-2H-chromen-6-yl)-3-(4-trifluoromethylphenyl)-propenone], of purity greater than 98%, was synthesized in the Medicine Chemistry Laboratory at Shenyang Pharmaceutical University (see Fig. 1A). The agent was dissolved in DMSO to 100 mM and stored at −20 °C. MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide) was purchased from Sigma, U.S.A. and was dissolved in PBS. Propidium iodide (PI) was purchased from Biosharp and was dissolved in distilled water. SB203580 (a specific inhibitor of MAPK/p38), SP600125 (a specific inhibitor of MAPK/JNK) and PD98059 (a specific inhibitor of MAPK/ERK) were obtained from Sigma Aldrich (St Louis, MO). A83-01, a TGF-β inhibitor, was purchased from Tocris Bioscience (Minneapolis, MN). The primary antibodies against CyclinA2, CyclinB1, phospho-CyclinB1, cdc2, phospho-cdc2(Tyr15), p21, p53, Wee1, cdc25C, BRCA1, PCNA, Smad3, phospho-Smad3, Smad2, ERK1/2, phospho-ERK1/2, p38, phospho-p38, JNK, phospho-JNK, PARP, clv-PARP, and HIF-1α were purchased from Cell Signaling Technology (Danvers, MA); antibodies to β-actin, Smad4, Smad6, Smad7, and specific siRNA for HIF-1α were obtained from Santa Cruz Biotechnology (Santa Cruz, CA).
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10

Cell cycle analysis of HUVECs and H1975 cells

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A total of three groups were designed based on CCS. For the control group, 1×105 HUVECs were seeded into the upper chambers with 2 ml of RPMI-1640 medium, while 3 ml of RPMI-1640 medium supplemented with 10% FBS was added to the lower chambers. For the Exp_H group, 1×105 H1975 cells were seeded into the lower chambers at the same time as the control. For the Exp_HP group, 2×107 PLTs were seeded into the lower chambers based on the Exp_H.
The upper chamber inoculated with HUVECs was transferred to the corresponding lower chamber. Following incubation for 3 days at 37°C, cells were washed twice with cold PBS and harvested. Subsequently, cells were treated with ribonuclease A (Rnase A; lot, ST576; Beyotime Institute of Biotechnology) for 30 min at 37°C, and then treated with propidium iodide (PI; lot, 7007583; Biosharp Life Sciences) in the dark for 30 min at 4°C. The fluorescence intensity of cells was determined using a FACSCalibur flow cytometer (Becton-Dickinson and Company). Cell cycle phase distribution was calculated using ModFit LT software (Verity Software House, Inc.).
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