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Jasp version 0

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JASP version 0.14.1 is a free and open-source statistical software package. It provides a graphical user interface for conducting a variety of statistical analyses, including descriptive statistics, t-tests, ANOVA, regression, and more. The software is designed to be user-friendly and accessible to researchers from diverse backgrounds.

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90 protocols using jasp version 0

1

Multimodal Assessment of Cognitive Processing

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Descriptive statistics (means and standard deviations) were calculated for all variables in the study. PLI and ERSP values for 40 Hz and IGF were compared using paired sample t-test. For cognitive tasks, we performed principal component analysis to extract common latent dimension and assess the individual task loading. Pearson‘s correlation coefficients were calculated to assess the relationship between RTs from cognitive tasks and PLI/ERSP measures at 40 Hz, as well as at IGFs. To account for multiple comparisons, we Bonferroni-corrected the threshold for statistical significance, and the p-values less than 0.004 (0.05/13) were regarded as significant. Statistical analysis was performed using SPSSv20 (SPSS Inc., Chicago, IL, USA). In addition, we used JASP (version 0.14.1) [51 ] to conduct Bayesian analysis. To provide additional information on the level of evidence, we report Bayesian factors and credibility intervals for correlations between measures of cognitive processing speed and EEG measures.
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2

Cerebellar Volume Analysis in Groups

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Statistical analysis was performed by using the software JASP Version 0.14.1 (Amsterdam, Netherlands). We analyzed descriptive statistics in all participant groups and performed the Kruskal–Wallis test to identify statistically significant differences between groups. Furthermore, we analyzed descriptive statistics for each participant group for both cerebellar white matter volume and cortex volume, including mean, median, standard deviation, minimum, and maximum values.
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3

Statistical Analysis Using SPSS and JASP

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All statistical analyses were performed using SPSS Statistics version 21 (IBM, Armonk, NY, USA) and JASP version 0.14.1 (JASP team 2020) software.
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4

Shapiro-Wilk Test and Statistical Analysis

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The Shapiro-Wilk test was used to assess the normal data distribution. Categorical variables were calculated using frequencies and proportions whereas continuous data has been estimated by means, standard deviations, and ranges.
One-way analysis of variance testing or the Kruskal-Wallis test was used to analyze differences among 3 groups. The χ2 test was conducted for statistical analysis concerning categorical data when appropriate. Significant levels for multiple comparisons were adjusted using the Bonferroni procedure. Calculated P values were 2-tailed, a P-value <.05 was considered significant, and the range of confidence interval was 95% when appropriate. Statistical analysis was performed using JASP Team (2020). JASP (Version 0.14.1) (https://jasp-stats.org/).
An a priori calculation of sample size was done using g∗power 3.1.9.4 software (Heinrich-Heine-University, Dusseldorf, Germany). According to the analysis, at least 54 patients would be required (18 patients for each group), assuming a 2-tailed α value = 0.05 (sensitivity = 95%) and a β value = 0.95 (with a study power of 95%).
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5

Assessing Open-Label Placebo Effects

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Changes between the first and second assessment in expected OLP effects were tested using the Wilcoxon-signed-rank-test due to non-normally distributed data. Considering sleep quality, bodily symptoms, mental well-being, and psychological distress, respectively, as outcome variables, mixed 2x5x2-ANOVAs were performed to assess the OLP-effect (within-factor “condition”) and the influence of time (within-factor “day”) as well as brand name (between-factor “brand name”). Since the order of the phases (placebo intake or control phase in week one) did not significantly influence the results, this factor was not included in the reported analyses. Holm-corrected post hoc-tests were applied were appropriate. Contrast analyses were calculated to test the hypothesis that OLP effects were larger with a brand name. As measures of effect size, η22 ≥ 0.01 small; η2 ≥ 0.06 medium; η2 ≥ 0.14 large) and Cohen’s d (d ≥ 0.30 small, d ≥ 0.50 medium, d ≥ 0.80 large) are specified. As explorative analyses, to identify potential predictors of the OLP effect, Pearson correlations between psychological factors and the outcome measures (i.e., the difference between the average score during placebo and control phase) were calculated (r ≥ |.10| small; r ≥ |.30| medium, r ≥ |.50| large). The alpha level was set to 5%. Analyses were calculated with JASP version 0.14.1 (JASP Team, 2020 ).
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6

Predictive Value of FIB-4 Score in Outcomes

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We used standard statistical methods for descriptive statistics. Categorical variables were presented as frequencies and continuous variables as mean (standard deviation, SD) or median (interquartile range, IQR), when appropriate. Normality was assessed through the Shapiro–Wilk test. Depending on the normality of the distribution, comparisons were made by Student's t-test or Mann–Whitney test for continuous variables, and by Pearson χ2 test for categorical variables. The multivariate logistic regression was used to identify whether the FIB-4 score could be an independent predictor of poor 3-month outcome, and to establish the real prognostic value of demographic, clinical, and laboratory variables that reached statistical significance in the univariate analysis. To prevent biases, we did not include the variables already used for calculating the FIB-4 score in the logistic regression. An equivalent analysis was carried out for the secondary outcome, and is available in the Supplementary material. A two-tailed p-value of <0.05 was considered statistically significant for all tests. False discovery rate (FDR) correction was applied to deal with the multiple testing problem (results are expressed as adjusted p or adjp-values). Analysis was performed using JASP Team (2020). JASP (version 0.14.1).
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7

Evaluating Asynchronous Teaching Formats

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Statistical analysis was performed using JASP, Version 0.14.1 [43 ]. For descriptive analyses, mean values with standard deviation and percentages were built and presented as means (SD). The overall satisfaction with the course units was correlated with the different types of teaching formats (e.g., screencasts, lecture recordings, etc.) using point biserial correlation analysis with Pearson’s r [44 ]. A p-value of 0.05 was considered statistically significant. Free-text comments were evaluated and categorized by two different team members. Anchor examples were chosen separately and taken for each section after discussing them. Since the course structure differed between summer and winter semesters as described above, and as there was less time available to complete the “DigiPath” course in the winter semester, the results for the asynchronous course sections in the summer and winter semesters are presented separately. Since the student cohorts were predefined by the curriculum and could not be changed, a sample size calculation was not performed for this observational study.
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8

Trajectory of Clinical and Psychological Outcomes

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Statistical analysis of clinical and psychological variables was conducted in R and JASP (JASP Team (2020). JASP (Version 0.14.1) (Computer software). ANCOVAs, t-tests and chi-square tests were used to compare Mclust subgroups on clinical and demographic variables (i.e., age). Results were corrected using Holm method. For the treatment trajectory’s analysis, we used repeated measures ANOVA with Mclust as a fixed factor and assessment time (t0, t1, t3, t6, t12) as the repeated measure to examine effects of time. Groups were compared at each time point using ANCOVAs. Sex and age were used as covariates in all of the analyses.
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9

Seroprevalence and Risk Factors Analysis

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The confidence interval for the overall seroprevalence was calculated by a binomial test. We calculated odds raito, 95% CI, and Chi-square p-value when comparing 2 percentages of 2 or more categorical variables. We employed a 2-tailed independent t-test to compare the means of 2 continuous variables. We used one-way ANOVA to compare the means of the SARS-CoV-2 IgG index value across 3 and more variables. A logistic regression model was adopted to look at the association between the sociodemographic variables and SARS-CoV-2 IgG positivity. We used all sociodemographic and exposure variables for this model. To predict which symptoms were associated with seropositivity, we used another logistic regression model including all SARS-CoV-2 symptoms accounting for age and gender. Diagnosis and exposure to SARS-CoV-2 were excluded from this logistic regression model; it was expected to be the primary source for antibody generation and the expected strong correlation with the SARS-CoV-2 symptoms. We used JASP (version 0.14.1) (Computer software, Amsterdam, the Netherlands) to conduct statistical analysis.
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10

Statistical Analysis of Quantitative Data

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Statistical analysis was performed using JASP, version 0.14.1 (JASP, University of Amsterdam, Netherlands). Quantitative data were presented as means ± standard deviations, and ordinal data were presented as percentages.
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