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12 protocols using mouse anti myc

1

Indirect Immunofluorescent Labeling of Cells

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Indirect immunofluorescent labeling was performed as described [26] (link). Standard 96-well plate assays were stained with TRITC-Phalloidin (Sigma, 100 µg/ml stock solution, final concentration 1∶400) or Dy-647-Phalloidin (Dyomics, 100 µg/ml stock solution, final concentration 1∶200) and DAPI (Roche, 0.1 mg/ml). Samples on glass slides for confocal microscopy were stained with Cy3-Phalloidin (Sigma, 100 µg/ml stock solution, final concentration 1∶100) or Dy-647-Phalloidin (Dyomics, 100 µg/ml stock solution, final concentration 1∶200), DAPI and anti-Myc antibodies (mouse anti-Myc, Invitrogen, Carlsbad, CA/USA) and/or VE-Cadherin (rabbit anti-VE-Cadherin, Bender MedSystems, Burlingame, CA/USA). Secondary antibodies for Immunofluorescence used in this study were Cy5-conjugated goat anti-rabbit Ig antibodies (Dianova, Hamburg, Germany, 1∶100).
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2

Immunofluorescence Assay for Protein Localization

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Cells grown on cover slips were rinsed with PBS, fixed in 4 % paraformaldehyde and permeabilized with 0.1 M Tris-buffered saline (TBS; pH 7.6) containing 0.5 % Triton X-100 for 5 min. They were subsequently blocked with 3 % goat serum in TBS, incubated with primary antibodies (rabbit anti-Flag from Sigma Aldrich, mouse anti-Myc from cell signaling, or LB509 from Invitrogen) in TBS containing 1 % goat serum overnight at 4 °C and then incubated for 1 h with secondary antibodies. Immunolabeled cells were stained with nuclear stain DAPI (Invitrogen) for 10 min and observed by confocal fluorescence microscopy (Zeiss LSM 510, Carl Zeiss MicroImaging, Pleasanton, CA). Three independent experiments were performed to confirm the results. For each in situ cell uptake experiment, at least 60 αS-Flag cells were included for counting of cells bearing particles positive with Myc and Flag tags.
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3

Immunoprecipitation and Western Blot Analysis of Recombinant Proteins

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HEK-293FT cells were chemically transfected (Lipofectamine 2000, Invitrogen) according to the manufacturers’ protocol. After 24 h, cells were lysed in 25 mM Tris–HCl pH 8.0, 150 mM NaCl, 1 × protease inhibitor cocktail (HALT), 250 U/mL benzonase (Invitrogen), 10 mM DTT, 1% TritonX-100, 5 mM EDTA, and 0.5 × sodium orthovanadate. A goat anti-FLAG tag antibody (Abcam) was used for immunoprecipitation, with magnetic protein G beads used to harvest the immunocomplexes (Dynabeads, Thermo). This was then eluted in the presence of NuPAGE LDS buffer (Invitrogen), run on a 4–12% Bis–Tris gel (Invitrogen), and transferred to a nitrocellulose membrane (iBlot, invitrogen). Mouse anti-Myc (Invitrogen) and mouse anti-FLAG (Sigma) antibodies were used to blot for the recombinant proteins.
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4

Colocalization of TRPM8 and TCAFs

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Cells were cotransfected with his-tagged hTRPM8pcDNA4 plasmid and HA-tagged TCAF1 or myc-tagged TCAF2, and were washed two times, fixed with 4% formaldehyde–1× PBS for 15 min, washed three times, then permeabilized in PBS-gelatin (1.2%) complemented with 0.01% Tween 20 and 100 mM glycine for 30 min at 37°C. Afterward, cells were incubated with primary antibodies: 1:200 goat polyclonal anti-TRPM8 antibody (Antibodies Online), rabbit anti-HA (1:100; Abcam), and mouse anti-myc (1:100; Invitrogen) in PBS-gelatin at 37°C for 1.5 h. After thorough washes, the slides were treated with the corresponding secondary antibodies: donkey Rhodamine Red-X–labeled anti–goat (dilution 1:300; Jackson ImmunoResearch Laboratories, Inc.) and donkey Alexa Fluor 488–labeled anti–rabbit (dilution 1/250; Jackson ImmunoResearch Laboratories, Inc.) diluted in PBS-gelatin for 1 h at room temperature. The slides were then incubated with 0.3% Sudan Black in 70% ethanol in order to reduce autofluorescence, washed two times, and mounted with Mowiol. Fluorescence analysis was performed using a confocal microscope (LSM 700; Carl Zeiss, Inc.) and ImageJ analysis software.
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5

TRPM8 and TCAF Protein Interactions

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Cells were cotransfected with a his-tagged hTRPM8pcDNA4 plasmid and human influenza agglutinin (HA)-tagged TCAF1 or myc-tagged TCAF2, washed twice with PBS, and incubated for 60 min on ice in lysis buffer (1% Triton X-100, 1% sodium deoxycholate, 150 mM NaCl, 10 mM NaKPO4, pH 7.2, and anti-protease cocktail; Sigma-Aldrich). After centrifugation (12,000 g for 10 min at 4°C) of the lysates, protein concentration was determined by the BCA assay (Thermo Fisher Scientific), and equal amount of supernatants were incubated overnight at 4°C with mouse anti-his antibody (Invitrogen) immobilized on protein A/G PLUS agarose beads (Santa Cruz Biotechnology, Inc.). The pellet was washed three times, resuspended in SDS sample buffer, and heated at 37°C for 30 min, separated on 10% wt/vol SDS-PAGE gels, and analyzed by immunoblotting using rabbit anti-HA (1:2,000; Abcam), mouse anti-myc (1:500; Invitrogen), mouse anti-actin (1:5,000; Sigma-Aldrich), mouse anti-calnexin (1:2,000; EMD Millipore), rabbit anti-TRPM8 (1:1,500; Alomone Labs Ltd), and rabbit anti-TRPV6 (1:200; Santa-Cruz Biotechnology, Inc.) antibodies.
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6

Immunoprecipitation of Protein Complexes

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Cells were harvested by scraping in radioimmunoprecipitation assay buffer (25 mM Tris, 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 20 mm sodium molybdate, and 0.5% Nonidet P-40) containing protease inhibitor cocktails I and II (Sigma). Cell lysates were centrifuged at 16,000 × g for 10 min at 4°C. A portion of the supernatants was incubated sequentially at RT for 10 min with Dynabeads (Invitrogen) conjugated to anti-Myc antibody (Invitrogen), high affinity anti-HA antibody (Roche) or anti-M2 FLAG antibody (Sigma). Magnetic beads were washed three times with 200 μl of ice-cold PBS (137 mM NaCl, 10 mM phosphate, 2.7 mM KCl, pH 7.4). Bound protein complexes and input fractions were examined by Western blot analysis using mouse-anti-Myc (Invitrogen), mouse anti-FLAG (Sigma), rat anti-HA (Roche), or mouse anti-ITCH (BD Transduction Laboratories) antibodies.
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7

Visualizing Rbfox3-d31 Localization

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Live-cell images of HEK-293 cells transfected with an expression plasmid of GFP-tagged Rbfox3-d31 (for Fig. 2A) were captured using an X-Cite 120 Fluorescence Illumination System equipped Nikon Eclipse TS100. Cryosections of chicken embryos were prepared as described previously [2 (link)]. SK-N-SH cells transfected with Rbfox expression plasmids were fixed with 4% paraformaldehyde and permeabilized with 0.5% Triton X-100 in PBS. The sections were stained with the following primary antibodies: mouse anti-Rbfox3 (Millipore), mouse anti-myc (Invitrogen), and rabbit anti-GFP antibodies. Rhodamine Phalloidin (Life technology) staining was performed for F-actin. Alexa Fluor 488- and 594-conjugated goat antibodies against mouse IgG and rabbit IgG (Molecular Probes) were used as secondary antibodies. Nuclear DNA was stained with DAPI (Sigma-Aldrich). Images were captured using an LSM510 Meta confocal laser-scanning microscope (Carl Zeiss).
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8

SDS-PAGE and Immunoblotting Analysis

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SDS polyacrylamide gel electrophoresis was carried out under denaturing and reducing conditions using a Mini-PROTEAN III electrophoresis system following the manufacturer’s instructions (BioRad Laboratories, Mississauga, ON, Canada). Replica gels were transferred to nitrocellulose using an iBlot Gel Transfer Device as specified by the manufacturer (Invitrogen, Carlsbad, CA, USA). Immunoblotting was as previously described, using Tris-buffered saline/0.02% Tween 20 (TBST) for washing and 3% BSA in TBST for antibody incubations. Primary antibodies were all monoclonal: mouse anti-HSA (Genway Biotech, San Diego, CA; mouse anti-polyhistidine (Sigma-Aldrich, Oakville, ON, Canada); and mouse anti-myc (Thermo Fisher Scientific, Mississauga, ON, Canada). The secondary antibody was goat anti-mouse IgG, alkaline phosphatase- (AP-) conjugated. Blots were visualized through colour development resulting from the action of AP on substrate nitro blue tetrazolium chloride/5-bromo-4-chloro-3-indolyl-phosphate, toluidine salt (NBT/BCIP).
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9

Western Blot Protein Detection

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Cells were lysed with lysis buffer (25 mM Tris-HCl pH 7.4, 150 mM NaCl, 1 mM EDTA, 1% NP-40 and 5% glycerol, supplemented with a protease inhibitor cocktail (Halt™ Protease inhibitor cocktail, Thermo Scientific)). Proteins in the cell lysates were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and then transferred onto nitrocellulose membranes (Bio-Rad Laboratories). The membrane was blocked in 5% skim milk prior to incubation with indicated primary antibodies. Horseradish peroxidase (HRP)-conjugated goat anti-mouse IgG (Biolegend) or (HRP)-conjugated donkey anti-rabbit IgG (BioLegend) was used as secondary antibodies. Primary antibodies used in this study include mouse-anti-Myc (Thermo Scientific), rabbit-anti-FLAG (Cell Science Technology), rabbit-anti-HA (Cell Science Technology), mouse-anti-S1 (a kind gift from Dr. Qigai He, Huazhong Agricultural University), and mouse-anti-PEDV N (SD 6–29, Medgene Labs).
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10

Overexpression of Mutant EDA1 Protein

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HEK293T cells were seeded in 12‐wells plates the day before transfection. One microgram of vectors (pcDNA3.1) encoding mutant soluble Myc‐tagged EDA1 protein was transfected into each well using Lipofectamine 2000 (Invitrogen), and vectors encoding wild‐type soluble Myc‐tagged EDA1 and vector pcDNA3.1 were used as positive and negative controls, respectively. The cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 100 IU/ml penicillin, and 100 µg/ml streptomycin. Forty‐eight hours after the transfection, the cells and supernatants were harvested separately for western blot study, and the Myc‐tagged EDA1 proteins in cell lysates and supernatants were detected by western blots as described previously (Liu et al., 2019 (link)). For immunofluorescence studies, the cells were fixed with 4% paraformaldehyde for 20 min, then permeabilized before blocking in PBS with 5% horse serum for 1 hr and then stained overnight with mouse‐anti‐Myc (Thermo Fisher Scientific). Goat anti‐mouse 488 (Thermo Fisher Scientific) was used as a secondary antibody and DAPI (Thermo Fisher Scientific) was used for counterstaining. Images were captured using a microscope (Olympus IX83).
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