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11 protocols using lo flo medium

1

Phagosome Proteolysis and Lysosomal Activity Assay

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Phagosome proteolysis was determined based on the dequenching of DQ-BSA/Alexa594 conjugated 3μm silica beads (Kisker Biotech) as described (Sattler et al., 2013) . Cells were seeded at 3 x 10 5 per well of a glass-bottom 96 well-plate (Greiner) in Lo-Flo medium (Formedium) in triplicate. After 1 hour, 1.5 x 10 4 reporter beads were added to each well except controls and plates were spun at 800 x g for 10 seconds to synchronize bead uptake.
Cells were then washed twice with Lo-Flo to remove unengulfed beads before fluorescence measurements at 480/510nm and 560/620nm using a plate reader every 2 minutes. After subtraction of background fluorescence, DQ-BSA Signal was normalised for bead uptake using the Alexa594 signal.
Total proteolytic activity was performed in a similar way by adding the same reporter beads to cell lysates (Buckley et al., 2019) . 4 x 10 7 cells/mL in 150mM potassium acetate pH4.0 were lysed by two freeze-thaw cycles in liquid nitrogen. Cell debris was removed by centrifugation at 18,000 x g for 5 minutes at 4°C before 1.23 x 10 5 beads were added 100µL of supernatant in 96 well plates and measured as above. Cathepsin D levels were measured by Western blot using the previously published antibody (Journet et al., 1999) .
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2

Chemotaxis Assay for Cell Migration

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Cellular morphology, pseudopod dynamics and cell migration were measured by an under-agarose folate chemotaxis assay as described earlier [13] . In brief, 0.4% SeamKem GTG agarose was dissolved in boiling Lo-Flo medium (Formedium).
After cooling, 10 µM folic acid was added. 5 ml of agarose-folate mix was poured into the 1% BSA-coated 50mm glass bottom dishes (MatTek). A 5 mm wide trough was cut with sterile scalpel and filled with 200 µl of 2x 10 6 cells/ml. Cell migration was imaged after 4-6h with 10x and 60x DIC. To examine the localization of labelled proteins in the pseudopods, cells were also imaged using an AiryScan confocal microscope (Zeiss).
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3

Imaging Multinucleate Dictyostelium Cells

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Cells were cultivated in Petri dishes containing nutrient medium [36 (link)] supplemented with 10 µg/mL of blasticidin S (Gibco, Life Technologies Corporation, Grand Island, NY, USA), 10 µg/mL of geneticin (Sigma-Aldrich, St. Louis, MO, USA), or 33 µg/mL hygromycin B (EMD Millipore Corp., Billerica, MA, USA) at 21 ± 2 °C.
For imaging, cells rinsed off the Petri dish were transferred to an HCl-cleaned cover-glass bottom dish (FluoroDish, WPI INC., Sarasota, FL, USA) and kept for 1 to 2 h in LoFlo medium (ForMedium Ltd., Norfolk, UK). The rate of mitosis could be increased by incubating the cells for about 20 h at 4 °C in Petri dishes with nutrient medium and subsequently bringing them to room temperature before transfer to LoFlo medium.
Large cells with wild-type AX2-214 background were produced by electric pulse-induced fusion as described by Gerisch et al. [29 (link)]. Myosin-II-null cells were cultivated in shaken suspension in nutrient medium for about 36 h to get large multinucleate cells [20 (link)]. Multinucleate cells were transferred onto HCl-cleaned cover-glass bottom dishes and incubated in LoFlo medium for about 1 h before imaging was started. Where indicated in the figure legends, cells were overlaid with a thin agarose sheet [37 (link),38 ]. The velocity of unilateral furrow propagation was measured beginning at 1 µm of ingression.
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4

Multinucleate Septase-null Cell Cultivation

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Cells were cultivated in nutrient medium as described by Malchow et al.24 (link), supplemented with 10 µg/ml of Blasticidin S (B10) (Gibco, Life Technologies Corporation, Grand Island, NY, USA), 10 µg/ml of Geneticin (G10) (Sigma-Aldrich, St. Louis, MO, USA), and/or of 33 µg/ml of Hygromycin B (H33) (Calbiochem, Merck KGaA, Darmstadt, Germany) in plastic Petri dishes at 21 ± 2 °C.
To increase the rate of mitotic stages in the multinucleate Septase-null cells, the nutrient medium was removed and the cells were rinsed off the Petri dishes with Loflo medium (ForMedium Ltd., Norfolk, UK). The cells were then transferred to HCl-cleaned cover-glass bottom dishes (FluoroDish, WPI INC., Sarasota, FL, USA) and either incubated overnight at 21 ± 2 °C in Loflo medium or imaged the same day after incubation for 1–2 h in Loflo medium. Before imaging, cells were overlaid by a thin agarose sheet25 that had been incubated in Loflo medium.
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5

Pseudopod Formation and Cell Migration

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Formation of pseudopods and cell migration were measured by under-agarose folate chemotaxis assay as described in Laevsky and Knecht, 2003 [59 (link)]. In brief, 0.4% SeamKem GTG agarose in Lo-Flo medium (ForMedium) was prepared by boiling. After cooling, 10 μM folic acid was added. Next, 5 ml of agarose-folate mix was poured into the BSA-coated 50-mm glass-bottom dishes (MatTek). A 5-mm-wide trough was cut with sterile scalpel and filled with 2×106 cells/ml. Cell migration was imaged after 4–6 hours with 10× and 60× DIC. To examine the localization of labeled proteins in the pseudopods, cells were also imaged by AiryScan confocal microscope.
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6

Cultivation and Imaging of Dictyostelium

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D. discoideum AX2 cells were used as an axenic strain and NC4 cells were used as nonaxenic, wild-type cells. The PI3 kinase quintuple knockout strain HM1200 (Hoeller and Kay, 2007 (link)) was obtained from the Dicty Stock Center. For axenic growth, cells were cultivated on Petri dishes under HL5 medium (ForMedium). Nonaxenic cultivation was done on Petri dishes under SorMC buffer supplemented with live Klebsiella aerogenes at an OD600 of 2. SorMC buffer consists of 15 mM KH2PO4, 2 mM Na2HPO4, 50 µM MgCl2, and 50 µM CaCl2, pH 6.0. To reduce autofluorescence of axenically cultivated cells in preparation for fluorescence microscopy, cells were incubated overnight in LoFlo medium (ForMedium). For microscopy, cells were put on a 3.5-cm acid-washed glass-bottom MatTek dish.
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7

Infection Assay of Legionella in Acanthamoeba

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A. castellanii amoebae were cultured in PYG medium and passaged the day prior to infection such that 2×104 cells were present in each well of a 96-well plate (Cell Carrier, black, transparent bottom from Perkin-Elmer). Cultures of L. pneumophila harbouring the GFP-producing plasmid pNT-28 were resuspended from plates to a starting OD600 of 0.1 in AYE medium, and grown overnight on a rotating wheel at 37°C to an OD600 of 3. Bacteria were diluted in LoFlo medium (ForMedium) such that each well contained 8×105 bacteria, an MOI of 20. Infections were synchronised by centrifugation at 1500 rpm for 10 minutes. Infected cultures were incubated in a 30°C incubator and the GFP fluorescence was measured by a plate spectrophotometer at appropriate intervals (Optima FluoStar, BMG Labtech) [88] (link). Time courses were constructed and data from the point directly after entry up to stationary phase were used to determine the effect of compounds versus vehicle control.
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8

Analyzing Cell Migration via Folate Chemotaxis

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Cellular morphology, pseudopod dynamics and cell migration were measured by an under-agarose folate chemotaxis assay as described previously (Singh et al., 2020 (link); Singh and Insall, 2022 (link)). In brief, 0.4% SeamKem GTG agarose in Lo-Flo medium (Formedium) was boiled. After cooling, folic acid to a final concentration of 10 μM was added. 5 ml of agarose-folate mix was poured into the 1% BSA-coated 50 mm glass bottom dishes (MatTek). A 5 mm wide well was cut with a sterile scalpel and filled with 200 μL of 2 × 106 cells/ml. Cell migration was imaged after 4–6 h with 10x and 60x differential interference contrast (DIC) microscopy. To examine the localization of labelled proteins in the pseudopods, cells were also imaged by AiryScan confocal microscopy.
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9

Cell Imaging Protocol for Transcription Dynamics

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Cell culture preparation for imaging was carried using cells grown in HL5 medium (FORMEDIUM) supplemented with penicillin+streptomycin. 20 µg/ml G418 selection was added 72 hr after thawing frozen stocks. 18 hr prior to imaging, cells were split into imaging chambers (NUNC LabTek-II) at the appropriate density for imaging the next day at around 20% confluency, drug selection was removed and HL5 was replaced with imaging medium (75% LoFlo medium (Formedium), 10% FBS, 15% HL5). Imaging media was refreshed 1.5 hr before imaging. Imaging was performed using an UltraView Vox spinning disc confocal microscope. Objective, laser lines, camera (Hamamatsu C9100-13 EM-CCD) settings, laser powers and exposure times were optimized to minimize photobleaching and ensure negligible photo-toxicity (measured in terms of the average transcription spot intensity - in trials we found transcription spots were attenuated before reduced cell motility or cell rounding is observed). Data were analysed using custom-built software integrating both cell tracking and spot detection. Code can be accessed at http://www.ucl.ac.uk/lmcb/sites/default/files/Corrigan2016MatlabFiles.zip.
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10

Quantifying Phagosome Proteolysis in Cells

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Phagosome proteolysis was determined based on the dequenching of DQ-BSA/Alexa594 conjugated 3-μm silica beads (Kisker Biotech) as described by Sattler et al. (2013 (link)). Cells were seeded at 3 × 105 per well of a glass-bottomed 96-well plate (Greiner) in Lo-Flo medium (Formedium) in triplicate. After 1 h, 1.5 × 104 reporter beads were added to each well except controls, and plates were spun at 800 × g for 10 s to synchronize bead uptake. Cells were then washed twice with Lo-Flo to remove unengulfed beads before fluorescence measurements at 480/510 nm and 560/620 nm using a plate reader every 2 min. After subtraction of background fluorescence, DQ-BSA Signal was normalized for bead uptake using the Alexa594 signal.
Total proteolytic activity was performed in a similar way by adding the same reporter beads to cell lysates (Buckley et al., 2019 (link)). Samples of 4 × 107 cells/mL in 150 mM potassium acetate at pH 4.0 were lysed by two freeze–thaw cycles in liquid nitrogen. Cell debris was removed by centrifugation at 18,000 × g for 5 min at 4°C before 1.23 × 105 beads were added to 100 µl of supernatant in 96-well plates and measured as above. Cathepsin D levels were measured by Western blot using the previously published antibody (Journet et al., 1999 (link)).
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