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5 protocols using anti car

1

Immunostaining Protocol for Tissue and Cultured Cells

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Sections of tumor tissues and cultured cells were stained as described.44 (link) Primary antibodies: anti-NF-κB p65 (Abcam, cat. #7970), anti-cytokeratin 8 (Troma-1; Developmental Studies Hybridoma Bank, University of Iowa), anti-CAR (Santa Cruz, cat.#sc-15405) and anti-integrin alpha 6 (Abcam, cat. #ab62844-100). Images were obtained using an Axio Imager Z1 (Carl Zeiss, Jena, Germany) fluorescent microscope equipped with a high sensitivity CCD digital camera MRm (Carl Zeiss, Jena, Germany) and AxioVision software (release 4.8.3) (Carl Zeiss, Jena, Germany). Individual, manual scoring of tissue microarray samples was performed using the ImageScope image viewer from Aperio (Aperio Technologies, Vista, CA, USA). Intensity was recorded/scored in a semiquantitative manner.63 Evaluation of blinded histological sections was performed by trained pathologist.
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2

Western Blot Analysis of STAT1, Enterovirus, and CAR

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Cells were washed with cold PBS and lysed in Laemmli buffer. Immunoblot analysis was performed with anti-STAT1 (1:1000; Santa Cruz, Dallas, USA), enterovirus-specific rabbit antiserum (1:1000; KTL-510), anti-CAR (1:100; Santa Cruz Biotechnology), anti-α-tubulin (1:5000; Sigma, Bornem, Belgium), and anti-β-actin (1:2000; Cell signaling). Membranes were exposed to secondary peroxidase-conjugated antibody for 1 hr at room temperature. Immunoreactive bands were revealed using the SuperSignal West Femto chemiluminescent substrate (Thermo Scientific, Rockford, USA) and detected using a Bio-Rad chemi DocTM XRS+ (Bio-Rad laboratories). The densitometry of the bands was evaluated using Image Laboratoty software (Bio-Rad laboratories).
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3

Western Blot Analysis of CAR and DAF

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One million cells of HeLa and A549 cells were lysed using a buffer containing 1% Triton-X and 1% sodium deoxycholate with protease inhibitors (Sigma). A fraction of the lysate was run for 1 hour on a 4–15% gradient gel (Biorad) on denaturalizing conditions. After the run, we performed the transfer to a nitrocellulose membrane. We washed the membrane with PBS-T (PBS 1X and 0.1% Tween-20) and blocked for 1 hour in PBS-T plus 5% milk. After the blocking we washed again with PBS-T and left overnight with each one of the antibodies, anti-CAR and anti-DAF (Santacruz Biotechnology). We washed the membrane and we added the secondary fluorescent antibodies (DyLight 680 and DyLight800 conjugated, Thermo Scientific) for 1 hour. We washed the membrane one last time and measure the fluorescence in the Odyssey system (Li-Cor).
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4

Endothelial Cell Protein Expression Analysis

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We observed CAR and endothelial cell-to-cell junctional protein expression level; protein was extracted from both WT and KO endothelial cells. Immunoblot analysis used an ECL detection system as described previously [24 (link)]. Primary antibodies were used; anti-CAR (Santa Cruz Biotechnologies, Dallas, TX, USA), PECAM-1, VE-cadherin (R&D system, Minneapolis, MN, USA), FLK-1 (Sigma-Aldrich, Inc. St. Louis, MO, USA), integrin-β1D (Zymed Laboratories, Inc. South San Francisco, CA, USA), and GAPDH (Santa Cruz Biotechnologies, Dallas, TX, USA). Protein expression levels were evaluated with Image Lab software (Bio-Rad laboratories, Hercules, CA, USA) based on the signal intensity of each protein using GAPDH as an internal control for protein loading.
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5

Mechanosensory Complex Interactions with CAR

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We determined endogenous protein–protein interactions between CAR and the mechanosensory complex (VEGFR2, VE-cadherin, and PECAM-1) using Duolink in situ fluorescence reagents (Sigma-Aldrich). HUVECs adhered to coverslips were transfected with siRNA against CAR for 48 h or exposed to OSS for 24 h and fixed with 2% paraformaldehyde at room temperature for 20 min. After washing with PBS, cells were blocked with 5% normal donkey serum (in 0.5% Triton X-100) for 30 min. Cells were stained with anti-CAR (1:50; Santa Cruz Biotechnology), anti-VEGFR2 (1:50; Cell Signaling Technology), anti-VE-cadherin (1:50; Santa Cruz Biotechnology), or anti-PECAM-1 (1:50; Santa Cruz Biotechnology) antibody. After washing with 0.2% BSA in PBS, coverslips were stained with Duolink probes per the manufacturer’s instructions (Sigma-Aldrich), and probe-conjugated secondary antibodies were added and incubated for 1 h at 37 °C. Next, ligation was performed using the provided ligase for 30 min, followed by amplification using the provided polymerase for 100 min at 37 °C. Nuclei were counterstained with DAPI (100 ng/mL; Santa Cruz Biotechnology) for 5 min. We detected protein–protein interactions between CAR and the mechanosensory complex using a Zeiss LSM 880 Airyscan confocal microscope.
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