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11 protocols using tetrabutylammonium hydrogen sulfate

1

Standardized Bile Acid Analysis

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All chemicals and solvents were of the highest purity commercially available. Standard bile acids (sodium salts), including glycochenodeoxycholic acid (GCDCA), glycodeoxycholic acid (GDCA), glycocholic acid (GCA), taurochenodeoxycholic acid (TCDCA), taurodeoxycholic acid (TDCA), taurocholic acid (TCA), chenodeoxycholic acid (CDCA), deoxycholic acid (DCA) and cholic acid (CA), were purchased from Sigma-Aldrich (St. Louis, MO, USA). Three different oxgall powder samples were obtained from Sigma-Aldrich (Product code B3883), Oxoid (Product code LP005, Basingstoke, Hampshire, UK) and BD Difco (Product code 212820, Sparks, MD, USA). Acetonitrile and methanol (HPLC grade) were supplied by Tedia (Fairfield, OH, USA). The derivatization reagents p-bromophenacylbromide and N, N-diisopropylethylamine, and the ion-pairing reagent tetrabutylammonium hydrogen sulfate were also purchased from Sigma-Aldrich.
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2

Antioxidant Compound Characterization Protocol

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Methanol, water, and acetonitrile (HPLC grade), 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS), 2,4,6-tris (2-pyridyl)-s-triazine (TPTZ), gallic, α-resorcylic, gentisic, p-hydroybenzoic, 2,6-dihydroxybenzoic, m-hydroxybenzoic, vanillic, salicylic, syringic acid, homovanillic, p-coumaric acid, m-coumaric, o-coumaric, ferulic, sinapic, caffeic, and chlorogenic acid, tyrosol, glucoarabin (9-methyl-sulfinyl-nonyl-glucosinolate; GS9), glucocamelinin (10-methyl-sulfinyl-decyl-glucosinolate; GS10) and homoglucocamelinin (11-methyl-sulfinyl-undecyl-glucosinolate; GS11) potassium salt, and tetrabutylammonium hydrogen sulfate (TBAHS) were purchased from Sigma-Aldrich (St. Louis, MO, USA). All other chemicals were of analytical grade.
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3

Analyzing RNA Decay Products by HPLC

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Decay products were detected by analyzing the products of RNA decay reactions that contained 2 µM enzyme and 10 µM native or unmodified tRNAiMet in 100 mM NaCl, 20 mM Tris⋅Cl pH 7.5, 0.5 mM TCEP, and 5 mM ATP·MgCl2 after incubation at 30 °C for 1 h. Reactions were stopped by addition of proteinase K to a final concentration of 0.5 mg/mL and incubation at 37 °C for 30 min to degrade proteins in the reaction. Samples were mixed with an equal volume of 2× HPLC running buffer A (50 mM potassium phosphate pH 7.0 and 10 mM tetrabutylammonium hydrogensulfate [Sigma-Aldrich]). Products were then separated by ion-pair reverse-phase HPLC (Nova-Pak C18, 60 Å, 4 mm, 3.9 × 150-mm column) by running in buffer A at a flow rate of 1 mL/min at 40 °C and eluted with 100% buffer B (buffer A containing 50% [vol/vol] acetonitrile) from 5 min to 30 min (12 (link)). UV absorbance at 260 nm was monitored to detect nucleotides or RNA products.
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4

Arachidonic Acid Metabolism Assay

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Arachidonyl trifluoromethyl ketone (AACOCF3) was from Calbiochem (San Diego, CA, USA). AA, dithiothreitol (DTT), tetrabutylammonium hydrogen sulfate (TBA), ethylenediaminetetraacetic acid (EDTA), cytochalasin B (cyt B), choline chloride, 4-hydroxymercuribenzoic acid (pCMB), sulfinpyrazone (S-pyr), rotenone, myxothiazol, caffeine (Cf), A23187, dimethyl sulfoxide (DMSO), diphenyleneiodonium (DPI), apocynin, phorbol-12-myristate-13-acetate (PMA), DL-buthionine-[S,R]-sulfoximine (BSO), ryanodine (Ry), and the remaining chemicals were from Sigma-Aldrich (Milan, Italy). [3H] Arachidonic acid was from Amersham Pharmacia Biotech (Buckinghamshire, England). MitoSOX red and Rhod 2-acetoxymethyl (AM) were purchased from Molecular Probes (Leiden, The Netherlands). Perkin-Elmer Life and Analytical Sciences (Boston, MA) supplied L-[1-14C]AA (specific activity 5.35 mCi/mmol), which was dissolved in deionized water containing 0.1 mM acetic acid and stored in multiple aliquots at −20°C until use [20 (link)].
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5

Dihydralazine and Hydrochlorothiazide Analysis

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Pharmaceutical grade (Eur. Ph.) dihydralazine sulfate and hydrochlorothiazide, and tetrabutylammonium hydrogen sulfate for analysis from Sigma-Aldrich (St. Louis, MO, USA), ammonium formate, formic acid, acetonitrile and methanol for LC from Merck (Darmstadt, Germany), acetic acid (CH3COOH), sodium acetate (CH3COONa), hydrochloric acid, sodium chloride (NaCl), sodium tetraborate (Na2B4O7), sulphuric acid, sodium hydrogen phosphate (NaHPO4), sodium hydroxide (NaOH), kalium dihydrogen phosphate (KH2PO4) and kalium hydroxide for analysis from POCh (Gliwice, Poland), acetonitrile and water for LC–MS from J.T. Baker (Center Valley, PA, USA), Dihydralazinum® tablets 25 mg from Pabianickie Zakłady Farmaceutyczne (Pabianice, Poland) and Hydrochlorothiazidum® tablets 25 mg from Polpharma (Starogard Gdanski, Poland) were used. Acetate buffer was prepared with 0.2 M CH3COOH and 0.2 M CH3COONa. Phosphate buffer was prepared with 0.067 M KH2PO4 and 0.067 M Na2HPO4. Borate buffer was prepared with 0.05 M Na2B4O7 and 0.1 M NaOH. Buffers were prepared as described in Eur. Ph [2 ]. Buffers for kinetic studies have the same ionic strength of 1 M which was attained with 4 M NaCl. The pH measurements were done with a pH-meter HI9024C from Hanna Instruments (Padova, Italy).
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6

Synthesis of Novel Functionalized Compounds

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Acetic acid, β-alanine, 1-aminopropan-2-ol, 3-azidopropanol, 2,2′-azobis(2-methylpropionitrile), 6-(Boc-amino)hexanoic acid, chloromethyl chlorosulfate, chloromethyl pivalate, dibenzocyclooctyne-amine, dicyclohexylcarbodiimide, 4-(dimethylamino)pyridine, ethyl chloroformate, ethyldiisopropylamine, 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride, methacryloyl chloride, mebendazole, 4-nitrobenzyl chloroformate, phosgene solution, silica gel, sodium hydride, tetrabutylammonium hydrogen sulfate, tetramethylurea, thiazolidine-2-thione, and trifluoroAcetic acid were purchased from Sigma-Aldrich (Prague, Czech Republic). Acetonitrile, methanol and other common solvents and chemicals were purchased from Merck (Prague, Czech Republic). All chemicals and solvents were of analytical grade.
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7

Analytical Characterization of diPAP Compounds

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Both applied diPAP substances (6:2 diPAP
and 8:2 diPAP) were custom-synthetized at the University of Giessen,
Germany. A purity of >98% each was determined using phosphor and
hydrogen
NMR as well as mass spectrometry. Analytical PFAS standards and isotope
labeled internal standards (purity >99% each) were obtained from
Wellington
Laboratories (Guelph, Canada; complete list of standards can be found
in Table S1 in the Supporting Information,
SI). Sodium carbonate (Na2CO3 ≥ 99.5%),
sodium bicarbonate (NaHCO3 ≥ 99.0%), and concentrated
ammonia solution (25%) were purchased from Merck (Darmstadt, Germany).
Tetrabutylammonium hydrogensulfate (TBA ≥99%) and ammonium
acetate for liquid chromatography–mass spectrometry (LC–MS)
were from Sigma Aldrich (St. Louis, MO, USA). Methyl tert-butyl ether (MTBE ≥99.7%) was from Honeywell (Charlotte,
NC, USA). Potassium persulfate (≥99%) and LC–MS grade
methanol (MeOH) were obtained from Fisher Scientific (Waltham, MA,
USA). Nitrogen gas (grade 5.0) was from Messer (Bad Soden am Taunus,
Germany). Concentrated hydrochloric acid (37%), water (LC–MS
grade), and sodium hydroxide micro-granules (NaOH ≥99.5%) were
from Th. Geyer (Renningen, Germany).
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8

Liposomal Formulation Development and Characterization

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Cholesterol (Chol), soybean phosphatidylcholine (PC), 1,2-dioleoyl-3-trimethylammoniopropane (DOTAP) and 1,2-distearoyl-sn-glycero-3-phospho- (1′-rac-glycerol) (DSPG) were purchased from Avanti Polar Lipids (Alabaster, USA). AA (>99%), sucrose, sodium succinate buffer, sodium thiosulfate and tetrabutylammonium hydrogen sulfate were obtained from Sigma Aldrich (St. Louis, USA). Phosphoric acid (85%, v/v) and methanol were purchased from J.T. Baker (Phillipsburg, USA). Vivaspin ultrafiltration systems (Mw cutoff 100 kDa) were acquired from Sartorius Ltd. (Stonehouse, UK). All other reagents used were of analytical grade.
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9

Quantification of Thiamine Phosphate Species by HPLC

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Samples were analyzed by using a reverse-phased HPLC column (ISAspher 100-5 C18 BDS 250 × 4.0 mm column) on an HPLC instrument (Infinity, Agilent) with a detection wavelength The product glycerolaldehyde-3-phosphate is subsequently isomerized in (3) via TPI to dihydroxy-acetone-phosphate serving as a substrate for G3P-DH (4). The oxidation of NADH to NAD in ( 4) is monitored at 340 nm using a photo spectrometer (CARY 100 Bio UV-Visible Spectrometer) in 1 mL quartz cuvettes. 10 DOI: 10.1159/000526662 of 254 nm. The mobile phase consisted of with 0.1 M potassium phosphate and 4 mM tetra-butyl-ammonium hydrogen sulfate (Sigma-Aldrich) (pH 6.0) with 40 vol% methanol (buffer B) or without methanol (buffer A) (pH 7.2). Flow rate and column temperature were set to 0.85 mL min -1 and 24°C, respectively. The sample injection volume was 3 µL. Starting with 70% buffer A and 30% buffer B, gradient elution was carried out by applying 30-100% B for 10 min, followed by 100-30% B for 7 min. Using these conditions, the various ThP0-phosphate species eluted at times as summarized in Table 4. HPLC chromatograms of available standard compounds (ThP0, ThP1, and ThP2) are shown in online supplementary Fig s5.
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10

Quantification of Potassium Guaiacol Sulfonate and Sodium Benzoate

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Pharmaceutical grade samples of potassium guaiacolsulfonate (purity 99.8%) and sodium benzoate (purity 98.6%) were kindly provided as a gift by Vietnam Pharmacochemistry Company (Hanoi, Vietnam). Mucibaby pediatric oral powder (containing 58.72 mg of potassium guaiacolsulfonate and 113.40 mg of sodium benzoate per sachet) was purchased from market. Methanol of HPLC grade, tetrabutylammonium sulfate of PA grade, and tetrabutylammonium hydrogen sulfate of PA grade were purchased form Merck Vietnam (Ho Chi Minh City, Vietnam).
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