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7 protocols using mir 149 mimic

1

Modulation of miR-149 in Neuroblastoma Cells

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The expression of miR-149 in SH-SY5Y cells was evaluted by cell transfection,
which was performed by Lipofectamine 3000 reagent (Invitrogen, Carlsbad, CA,
USA) according to the manufacturer’s instruction. The miR-149 mimic (50 nM;
GenePharma, Shanghai, China) was used to upregulate the expression of miR-149
in vitro, and the mimic negative control (50 nM; mimic NC;
GenePharma, Shanghai, China) sequences were used as controls. Cells were
subjected to Aβ treatment at 24 h after cell transfection.
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2

Regulation of NSCLC cell lines by miR-149 and BCYRN1/PKM2

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Human NSCLC cell lines (A549, H460 and H1299) and the normal human bronchial epithelial cell line 16HBE were obtained from the American Type Culture Collection and were cultured in DMEM (Gibco; Thermo Fisher Scientific, Inc.) supplemented with 10% FBS (Gibco; Thermo Fisher Scientific, Inc.) at 37°C with 5% CO2.
miR-149 mimic, pre-negative control (NC), miR-149 inhibitor, NC, small interfering (si)RNA targeting BCYRN1 (si-BCYRN1) or targeting PKM2 (si-PKM2), and si-NC were synthesized by Guangzhou RiboBio Co., Ltd. The corresponding sequences were as follows: miR-149 mimic, 5′-UCUGGCUCCGUGUCUUCACUCCC-3′; pre-NC, 5′-UUCUCCGAACGUGUCACGU-3′; miR-149 inhibitor, 5′-GGGAGUGAAGACACGGAGCCAGA-3′; NC, 5′-CAGUACUUUUGUGUAGUACAA-3′; si-BCYRN1, 5′-CUCCAGAAAAAGGAAAAAAAAAA-3′; si-PKM2, 5′-GGAAAGAACAUCAAGAUUAUC-3′; si-NC, 5′-UUCUCCGAACGUGUCACGU-3′. Plasmid pcDNA-BCYRN1 or pcDNA-PKM2 were constructed by Shanghai GenePharma Co., Ltd. for the overexpression of BCYRN1 or PKM2 in cells. A459 or H1299 cells (2×105) were transfected with 50 nM plasmid or 50 nM RNAs using Lipofectamine® 3000 (Invitrogen; Thermo Fisher Scientific, Inc.), according to the manufacturer's protocol. After a 48-h incubation at 37°C, cells were harvested for subsequent experiments. An empty plasmid was used as the negative control.
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3

Transfection of TSCC cell lines

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Tca8113, SCC1, SCC‐4 and SCC‐15 TSCC cells were obtained from ATCC. These cells were kept in RPMI 1640 and penicillin, streptomycin and FBS. pcDNA3.1‐GACAT1 and control plasmid, miR‐149 mimic and scramble were collected from Shanghai GenePharma, and Lipofectamine 3000 (Invitrogen) was utilized for plasmid transfection.
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4

Luciferase Assay for miR-149 Regulation

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Human pulmonary artery smooth muscle cell (PASMC) line was purchased from the Chinese Academy of Sciences Cell Bank (Shanghai, China), were cultured in Dulbecco’s Minimum Essential Medium (DMEM) medium. The plasmids were constructed by subcloning the wild types of rs3740297 and rs7923671 into the pGL-3 promoter vectors (Promega, Madison, WI, USA), respectively. Then, the mutant plasmids were created using the Quick Change Mutagenesis Kit (Stratagene, La Jolla, CA, USA). All constructs were confirmed by sequencing. All plasmids were transfected into PASMC cells using Lipofectamine 3000 reagent (Invitrogen). For rs3740297, mimic control, antagomir control, miR-149 mimic or antagomir miR-149 (GenePharma, Shanghai) were transfected in different groups, respectively. Finally, firefly and Renilla luciferase activity was measured on Synergy H1 microplate reader (BioTek Instruments, Winooski, VT, USA) using Dual-luciferase Reporter Assay System (Promega, Madison, WI, USA). Luciferase activity was normalized to Renilla activity to correct for differences in transfection efficiency. All the experiments were performed in triplicate.
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5

miR-149 and circANKS1B Regulation

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miR-149 mimics, inhibitor, mimics negative control, and inhibitor negative control were purchased from GenePharma Biotechnology (Shanghai, China). A total of 5×105 cells were seeded in per well of six-well plate. After 24 hrs, mix 10 μL NC, miR-149 mimics or inhibitor, 185 μL DMEM, and 5 μL lipofectamine 2,000 reagent (Thermo Fisher, USA). siRNA-ANKS1B and siRNA-circANKS1B were purchased from GenePharma Biotechnology (Shanghai, China). A total of 5×105 cells were seeded in per well of six-well plate. After 24 hrs, mix 15 μL NC, siRNA-ANKS1B and siRNA-circANKS1B, 180 μL DMEM, and 5 μL lipofectamine 2,000 reagent (Thermo Fisher, USA). After 20 mins, pour the mix into a well of six-well plate and cultured in cell culture chamber. siRNA target sites of circANKS1B: 5ʹ-GAAGCCAGAGTGTAACAGA-3ʹ, siRNA target sites of ANKS1B: 5ʹ-CCAGTCGTGT GATTACAAA-3ʹ and FOXM1: 5ʹ- GCCAATCGTTCTCTGACAGAA-3ʹ.
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6

Regulation of MyD88 by miR-149 in Inflammatory NP Cells

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MiR-149 mimics were obtained from Genepharma (Shanghai, China). The full-length cDNA of MyD88 was cloned into pcDNA3.1 with a Myc-tag at the C-terminal. Transfection was performed using Liposome 2000 (Invitrogen, USA). LPS (10 μg/ml, Sigma) was used to induce inflammation in NP cells. For co-transfection experiments, NP cells were transfected with MiR-149 mimics together with pcDNA 3.1 vector or pcDNA3.1-MyD88 plasmid, and then treated with LPS.
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7

3'UTR-Luciferase Reporter Assay for miRNA

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TOP1 3′UTR fragment was inserted at the XbaI site, downstream of the luciferase gene in GV272 vector (GenChem, China) (Supplementary Figure S5). A vector containing the mutant of TOP1 3′UTR fragment was constructed as negative control. The vectors expressing ranilla luciferase were constructed as inner control. All of the sequences were confirmed by direct sequencing. Plasmids were isolated from E.coli by using TaKaRa MiniBEST Plasmid Purification Kit (Takara, Japan). The miR-149 mimics and the control miRNAs duplex (named as NC mimics) were purchased from GenePharma (China). The sequences were listed in Supplementary Table S9. Transfection was performed using Lipofectamine 3000 Kit (Invitrogen) according to the manufacturer's procedure. Fourty-eight hours after the transfection, luciferase activities were measured using a Dual-Luciferase Reporter Assay System (Promega) in Synergy H1 systems (Bio Tek, USA). The relative luciferase activity was calculated as the ratio of firefly fluciferase value and ranilla luciferase value. The experiment was repeated three times.
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