The largest database of trusted experimental protocols

14 protocols using 5c18 ms 2 cosmosil packed column

1

Synthesis and Purification of Polyamide-Fluorescein Conjugate

Check if the same lab product or an alternative is used in the 5 most similar protocols
1.0 mg of polyamide 2 (0.53 µmol) and 0.82 mg of fluorescein-5-isothiocyanate (1.1 µmol) were dissolved in 6.0 µL DMF, and then 0.45 µL of DIEA (1.1 µmol) was added. After the mixture was stirred at r.t. for 3 h, it was triturated with diethyl ether and purified by PU-2089 Plus HPLC (JASCO) using 10 ID x 150 mm 5C18-MS-II COSMOSIL Packed Column (Nacalai Tesque, Inc.) in 0.1 % TFA in water and acetonitrile as the eluent at a flow rate of 3.0 mL/min and a linear gradient elution of 30 to 50% acetonitrile in 30 min. The collected fractions were concentrated on evaporator and lyophilized. Then we obtained the polyamide 8 (1.0 mg, 0.44 µmol, 83% yield). Analytical HPLC: tR = 11.5 min (0.1% TFA/MeCN, linear gradient 0-50%, 0-20 min). ESI-TOFMS m/z calcd for C107H124N35O23S 3+ [M + 3H] 3+ 766.3105, found 766.3124.
+ Open protocol
+ Expand
2

Synthesis of Py-Im Polyamide-Biotin Conjugate

Check if the same lab product or an alternative is used in the 5 most similar protocols
To a solution of the crude Py-Im polyamide (2.3 mg) in DMF (150 μL), DIEA (0.8 μL, 4.7 μmol) and NHS-PEG12-Biotin (4.0 mg, 4.2 μmol, ThermoScientific) were added. The reaction mixture was incubated overnight at room temperature. Evaporation of the solvent gave a yellow oil, which was purified by PU-2089 Plus HPLC (JASCO) using 10 ID ×150 mm 5C18-MS-II COSMOSIL Packed Column (Nacalai Tesque, Inc.) with 0.1% TFA in water and acetonitrile as the eluent at a flow rate of 3.0 mL/min and a linear gradient elution to afford the hairpin Py-Im Polyamide-biotin conjugate (0.8 mg, 0.29 μmol, 9.3%) as a light yellow powder. Analytical HPLC: tR = 18.2 min (0.1% TFA/MeCN, linear gradient 0-50%, 0-20 min). ESI-TOF-MS m/z calcd for C126H177N39O32S 3+ [M + 3H] 3+ 927.7787, found 927.7815.
+ Open protocol
+ Expand
3

Biotin-Labeling of Polyamide Compound

Check if the same lab product or an alternative is used in the 5 most similar protocols
1.0 mg of polyamide 3 (0.54 µmol) was dissolved in 5.4 μL DMF solution of NHS-PEG12-Biotin (0.10 mg/µL, 0.57 µmol), and then 0.55 μL of DIEA (3.2 μmol) was added. After the mixture was stirred at r.t. for 2 h, it was triturated with diethyl ether and purified by PU-2089 Plus HPLC (JASCO) using 10 ID x 150 mm 5C18-MS-II COSMOSIL Packed Column (Nacalai Tesque, Inc.) in 0.1 % TFA with water and acetonitrile as the eluent at a flow rate of 3.0 mL/min and a linear gradient elution of 30 to 50% acetonitrile in 30 min. The collected fractions were concentrated on evaporator and lyophilized. Then we obtained the polyamide 9 (0.5 mg, 0.2 µmol, 35% yield). Analytical HPLC: tR = 11.2 min (0.1% TFA/MeCN, linear gradient 0-50%, 0-20 min). ESI-TOFMS m/z calcd for C120H181N35O34S 4+ [M + 4H] 4+ 672.0802, found 672.0787.
+ Open protocol
+ Expand
4

Synthesis and Purification of Polyamide-Fluorescein Conjugate

Check if the same lab product or an alternative is used in the 5 most similar protocols
1.0 mg of polyamide 4 (0.54 µmol) and 0.21 mg of fluorescein-5-isothiocyanate (0.54 µmol) were dissolved in 6.0 µL DMF, and then 0.23 µL of DIEA (0.54 µmol) was added. After the mixture was stirred at r.t. for 2 h, it was triturated with diethyl ether and purified by PU-2089 Plus HPLC (JASCO) using 10 ID x 150 mm 5C18-MS-II COSMOSIL Packed Column (Nacalai Tesque, Inc.) with 0.1 % TFA in water and acetonitrile as the eluent at a flow rate of 3.0 mL/min and a linear gradient elution of 30 to 50% acetonitrile in 30 min. The collected fractions were concentrated on evaporator and lyophilized. Then we obtained the polyamide 13 (0.8 mg, 0.4 µmol, 66% yield). Analytical HPLC: tR = 11.7 min (0.1% TFA/MeCN, linear gradient 0-50%, 0-20 min). ESI-TOFMS m/z calcd for C104H123N33O24S 3+ [M + 3H] 3+ 750.3067, found 750.3055.
+ Open protocol
+ Expand
5

Polyamide 7 Synthesis via PEG Biotin Conjugation

Check if the same lab product or an alternative is used in the 5 most similar protocols
1.0 mg of polyamide 2 (0.53 μmol) was dissolved in 4.9 μL DMF solution of NHS-PEG12-Biotin (0.11 mg/μL, 0.52 μmol in 4.9 μL), and then 0.53 μL of DIEA (3.1 μmol) was added. After the mixture was stirred at r.t. for 2 h, it was triturated with diethyl ether and purified by PU-2089 Plus HPLC (JASCO) using 10 ID ×150 mm 5C18-MS-II COSMOSIL Packed Column (Nacalai Tesque, Inc.) with 0.1% TFA in water and acetonitrile as the eluent at a flow rate of 3.0 mL/min and a linear gradient elution of 30 to 50% acetonitrile in 30 min. The collected fractions were concentrated on evaporator and lyophilized. Then we obtained the polyamide 7 (0.52 mg, 0.18 μmol, 33% yield). Analytical HPLC: tR = 11.1 min (0.1% TFA/MeCN, linear gradient 0-50%, 0-20 min). ESI-TOFMS m/z calcd for C123H181N37O33S 4+ [M + 4H] 4+ 684.0830, found 684.0834.
+ Open protocol
+ Expand
6

Synthesis and Purification of Polyamide-Fluorescein Conjugate

Check if the same lab product or an alternative is used in the 5 most similar protocols
0.90 mg of polyamide 1 (0.46 µmol) and 0.36 mg of fluorescein-5-isothiocyanate (0.92 µmol) were dissolved in 6.0 µL DMF, and then 0.88 µL of DIEA (0.92 µmol) was added. After the mixture was stirred at r.t. for 3 h, it was triturated with diethyl ether and purified by PU-2089 Plus HPLC (JASCO) using 10 ID x 150 mm 5C18-MS-II COSMOSIL Packed Column (Nacalai Tesque, Inc.) with 0.1 % TFA in water and acetonitrile as the eluent at a flow rate of 3.0 mL/min and a linear gradient elution of 30 to 50% acetonitrile in 30 min. The collected fractions were concentrated on evaporator and lyophilized. Then we obtained the polyamide 11 (1.0 mg, 0.43 µmol, 93% yield). Analytical HPLC: tR = 11.4 min (0.1% TFA/MeCN, linear gradient 0-50%, 0-20 min). ESI-TOFMS m/z calcd for C123H180N37O33S 3+ [M + 3H] 3+ 782.3142, found 782.3176.
+ Open protocol
+ Expand
7

HPLC Analysis of Nitrogenous Bases

Check if the same lab product or an alternative is used in the 5 most similar protocols
The high-performance liquid chromatography (HPLC) system (Waters, Milford, MA) consisted of a series 600 controller, a series 717 plus autosampler, and a series 996 photodiode-array detector, connected to a cartridge column (GL Sciences, Tokyo, Japan; average particle size of 5 μm) and a Cosmosil packed 5C18-MS-II column (Nacalai, San Diego, CA; internal diameter of 4.6×250 mm; average particle size of 5 μm). The mobile phase consisted of buffer A (2.5% methanol in 0.01 M ammonium dihydrogen phosphate, pH 5.3) and buffer B (20% methanol in 0.01 M ammonium dihydrogen phosphate, pH 5.1). Elution started with 100% buffer A and consisted of the following linear gradient steps: 0–10 min, 0–25% buffer B; 10–20 min, 25–40% buffer B; 20–60 min, 40–100% buffer B. A flow rate of 0.9 ml/min and an injection volume of 20 μl was used. Temperature of the column was maintained at 25°C. Detection was done at a wavelength of 260 nm. Deionised water used for preparation of the HPLC mobile phase and sample dilution was prepared with the Milli-Q purification system (Millipore, Bedford, MA). Nitrogenous bases, nucleosides, HPLC-grade methanol, and ammonium dihydrogen phosphate were obtained from Sigma-Aldrich (St. Louis, MO).
+ Open protocol
+ Expand
8

Transglycosylation of PU Glucosides

Check if the same lab product or an alternative is used in the 5 most similar protocols
To identify the PU glucosides and assay their water
solubility and biological activity, the transglycosylation reaction
was scaled-up to 175 mL under optimal condition: 1 mM PU, 4 mg/mL of α-CD, 35 mg of purified CGTase, and 50 mM Tris-HCl
(pH 7.0) at 40 °C for 2 h. The reaction was quenched by the addition
of an equal volume of ice-cold MeOH and centrifuged at 12,000 rpm
for 20 min. The supernatant was concentrated to 5 mL under reduced
pressure and filtered by a 0.45 μm membrane. Then, the filtered
solution was purified by a reverse-phase semipreparative HPLC system
(Wufeng Scientific Instruments Co., Ltd, China) equipped with a COSMOSIL
Packed 5C18-MS-II column (250 mm × 10.0 mm I.D., 5 μm,
Nacalai Tesque, Inc, Japan). The mobile phase was a mixture of water
(0.1% formic acid)/acetonitrile (8:1). The flow rate was 3 mL/min,
and the detection wavelength was 254 nm. The purified products were
further identified by HR-ESI-MS and NMR.
+ Open protocol
+ Expand
9

HPLC Analysis of EPI and Icariin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Shimadzu LC‐40 HPLC system was used for chromatographic analysis of EPI and icariin. Reversed phase C18 ODS column (10ID × 250 mm, Cosmosil 5C18‐MS‐II Packed column, Nacalai Tesque) was used for the column. Column temperature 30°C, The flow rate was set to 2.0 mL/min and the detection wavelength was 210 nm. The mobile phase was 0.1% phosphoric acid solution (A)‐acetonitrile (B), the linear elution procedure was 0–50 min, 10%–100% B.
+ Open protocol
+ Expand
10

HPLC Analysis of Phenolic Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chromatographic analysis of phenolic compounds in the BD and AD samples was carried out according to Sęczyk et al. [18 (link)]. Samples were analyzed with a Varian ProStar HPLC system (Varian, Palo Alto, CA, USA) equipped with a ProStar diode array detector (DAD). The analytical column was a 250 mm × 4.6 mm COSMOSIL 5C18-MS-II Packed Column (Nacalai Tesque, Inc., Kyoto, Japan). The mobile phase consisted of 0.1% formic acid in water (solvent A) and 0.1% formic acid in acetonitrile (solvent B). Elution mode was programmed as follows: 0–5 min, 5% B; 5–20 min, 5–100% B; 20–25 min, 100% B; 25–30 min 100–5% B. The flow rate was 1 mL/min and the column thermostat was set at 30 °C. The spectrophotometric detection was performed at wavelengths: 270 nm for GA, 280 nm for CAT, 325 nm for FA and CGA, and 350 nm for Q and A. Quantification of phenolic compounds was carried out using external standard calibration curves.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!