The largest database of trusted experimental protocols

Geneart dna string

Manufactured by Thermo Fisher Scientific

The GeneArt DNA String is a laboratory tool used for the synthesis of custom DNA sequences. It provides a reliable and efficient method for the creation of synthetic DNA fragments. The core function of this product is to facilitate the generation of custom genetic material for various applications in life science research and development.

Automatically generated - may contain errors

4 protocols using geneart dna string

1

CRISPR-Cas9 Mediated Genome Editing

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were transfected with 250 ng U6-gRNA GeneArt DNA String (Thermo) pairs (Supplementary Table 1) and 250 ng pSPCas9(BB)-2A-GFP (PX458) into dLP cells with mAb integrated into LP2. Three days post transfection, cells were sorted for GFP-positive single cells and genomic DNA was assayed by PCR for exon excision (Supplementary Table 2). pSPCas9(BB)-2A-GFP (PX458) was a gift from Feng Zhang (Addgene plasmid # 48138). 44
+ Open protocol
+ Expand
2

CRISPR/Cas9-Mediated Lentiviral Construct Integration

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single-and multi-LP cell lines in LP2, LP8 and LP20 loci were constructed by homologous recombination with CRISPR/Cas9 as described 26 with the following changes. Targeted integrations were performed by co-transfecting 500 ng of circular LP donor vector with 40 ng of pSpCas9(BB) (pX330) plasmid and 150 ng of U6-gRNA GeneArt DNA String (Thermo). About 10 5 cells were transfected in triplicate with a Neon electroporator (Invitrogen) using 10 pulses of 1560 V and 5 ms width, and seeded in 24-well plate. Three days post-transfection cells were combined and transferred to a 125 mL flask with 10 mL CD-CHO media, recovered for 1 day, and on day 4 subjected to antibiotic selection with either hygromycin (200 µg/mL) or blasticidin (2-20 µg/mL) for two weeks followed by clonal sorting with FACS. Clonal cells were verified with diagnostic PCR using locus-specific and LP-specific primers (on-target integration) and backbone-specific primers (off-target integration). Clones exhibiting locus-specific and backbone-free integration, and stable and homogenous LP expression were isolated and subsequently used for mAb payload and genetic circuits integrations. pX330-U6-Chimeric_BB-CBh-hSPCas9 was a gift from Feng Zhang (Addgene plasmid # 42230). 43
+ Open protocol
+ Expand
3

CRISPR Targeting of CAG Repeats

Check if the same lab product or an alternative is used in the 5 most similar protocols
The target sequence for the guide RNA was designed and selected using the E-CRISP design site based on proximity to CAG repeat region and limited off-target effects (http://www.e-crisp.org/E-CRISP/). The target sequence (CGGGCCGCGGATGACGTCAGG) was incorporated into a synthesized GeneArt DNA String (Life Technologies), as described (Yang et al., 2014 (link)). This fragment and the pUC57 expression vector were simultaneously digested with EcoR1 and Pst1 restriction enzymes, ligated together, and transformed into DH5α bacteria. Surveyor nuclease assay was performed by PCR amplifying the region surrounding the putative cut site with the following primers: SCA73.1F 5′-GAGCGGAAAGAATGTCGGAGCG-3′ and SCA73.327R 5′-CAGGAACTTTGGAAGCCTCAACCC-3′. The PCR product was hybridized and treated with Surveyor Nuclease S and Surveyor Enhancer S according to manufacturer instructions (Transgenomic, Inc.).
+ Open protocol
+ Expand
4

CRISPR Targeting of CAG Repeats

Check if the same lab product or an alternative is used in the 5 most similar protocols
The target sequence for the guide RNA was designed and selected using the E-CRISP design site based on proximity to CAG repeat region and limited off-target effects (http://www.e-crisp.org/E-CRISP/). The target sequence (CGGGCCGCGGATGACGTCAGG) was incorporated into a synthesized GeneArt DNA String (Life Technologies), as described (Yang et al., 2014 (link)). This fragment and the pUC57 expression vector were simultaneously digested with EcoR1 and Pst1 restriction enzymes, ligated together, and transformed into DH5α bacteria. Surveyor nuclease assay was performed by PCR amplifying the region surrounding the putative cut site with the following primers: SCA73.1F 5′-GAGCGGAAAGAATGTCGGAGCG-3′ and SCA73.327R 5′-CAGGAACTTTGGAAGCCTCAACCC-3′. The PCR product was hybridized and treated with Surveyor Nuclease S and Surveyor Enhancer S according to manufacturer instructions (Transgenomic, Inc.).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!