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62 protocols using cellometer k2

1

Cell Growth and Viability Assay

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Cell lines were plated at 0.3×106 cells/mL in growth media with or without glutamine and an MTT assay was performed. For cell growth and viability measurements, Trypan blue exclusion assay was performed in triplicate using 0.4% Trypan blue and the Nexcelom Cellometer K2 up to 96 h.
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Cell Diameter Measurement Protocol

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MOE cells SCRshRNA, PTENshRNA, or PTENshRNA + PAX2 were plated at 1 × 106/ml. The day after the cells were trypsinized, centrifuged and washed in PBS. Twenty microliter of cell suspension was added onto the Cellometer K2 (Nexcelom) slides and cell count and diameter per each cell was measured by the machine. Data were presented in prism as percent per diameter.
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Measuring Cell Viability with Cellometer

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Two days prior the treatment, cells were plated in their regular media, which was renewed the following day. Cells were treated with MET-depleted media described previously and were counted at different time points, indicating that Cellometer K2 with the AO/PI reagent (Nexcelom) was used according to the manufacturer’s instructions. For each time point, a number of 3 wells/condition were counted and normalized to the first time point of the experiment. Results showed a representative experiment from 3 independent experiments ± SD.
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Cell Viability Assay with Glutamine

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Cell lines were plated at 0.3 × 106 cells/mL in growth media with or without glutamine and an MTT assay was performed. For cell growth and viability measurements, Trypan blue exclusion assay was performed in triplicate using 0.4% Trypan blue and the Nexcelom Cellometer K2 up to 96 hours.
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5

Apoptosis and Autophagy Evaluation in A549 Cells

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Cell apoptosis was evaluated using propidium iodide (PI)/Annexin V-FITC fluorescence staining. Briefly, A549 cells were treated with specified concentrations of berberine and cinnamaldehyde alone or in combination for 48 h in the presence or absence of Z-VAD-FMK, rapamycin, or HgCL2. 5 μl PI and 5 μl Annexin V-FITC were added to cells for 10 min, and then washed once with PBS. After staining, cells were visualized and analyzed using a Cellometer K2 (Nexcelom Bioscience).
To assess cell autophagy, A549 cells were treated with specified concentrations of berberine and cinnamaldehyde alone or in combination for 48 h under 10% serum or 2% low serum culture conditions. Cells were stained with AO (1 μg/ml) at 37°C for 30 min before observation. Red acidic vesicular organelles (AVOs) stained by AO in autophagic cells were visualized under a fluorescence microscope. Cell autophagy was further estimated via LC3-B immunofluorescent staining using PE-conjugated anti-LC3-B. Intracellular fluorescence was estimated using flow cytometry assay.
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6

Euthanasia and BAL Collection for Cytokine Analysis

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Animals were euthanized with Euthasol (pentobarbital sodium/phenytoin sodium) prior to BAL and blood collection. A mid-line dissection through the abdominal cavity up to the thoracic cavity was performed followed by a small incision at the edge of the diaphragm, which resulted in a fatal pneumothorax. Then, a right ventricular puncture for the collection of blood was performed. Blood was collected in a microvette microtube with EDTA (Kent Scientific) and kept on ice and then spun at 2000 rpm. Serum was collected and used for IL-6 determination by ELISA (Thermo Fisher, KMC0062) (37 (link)). Bronchoalveolar lavage (BAL) fluid was obtained through a 20-gauge angiocath ligated into the trachea through a tracheostomy. A total of 1-ml of PBS instilled into the lungs was aspirated three times to collect BAL fluid for cell counts (Cellometer K2; Nexcelom Bioscience), protein quantification (Bradford assay) and IL-6 determination by ELISA.
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7

Viability Analysis of Primary AML Cells

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Primary AML splenocytes treated by rmIL-4 were harvested and stained with Acridine orange (AO) and PI (Nexcelom Bioscience, Lawrence, MA, USA). Live/dead cells were analyzed and imaged using a Cellometer K2 (Nexcelom Bioscience, Lawrence, MA, USA).
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8

Isolation of Rat Peripheral Blood Mononuclear Cells

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The PBMCs from rats were separated with Percoll separation medium. The gradient Percoll separation solution was prepared as follows: Percoll: 10 × Phosphate-Buffered Saline (PBS): 1 × PBS = 6.3:0.7:3. The collected peritoneal venous blood from rats was diluted with 1 × PBS in an equal proportion on a sterile ultra-clean bench. 5 mL of Percoll separation solution was added to a 15 mL centrifuge tube. The diluted blood was spread on the upper layer of the separation solution in the centrifuge tube in equal proportions and centrifuged in a horizontal centrifuge at 1,500 g for 40 min at room temperature (23 (link)). After centrifugation, the lymphocytes aggregated in the middle layer of the blood plasma and the separation solution. A Pasteur pipette was inserted into the middle layer to carefully aspirate and transfer cells to another centrifuge tube and the cells were centrifuged for 5 min at 1,500 g. The cells were washed with 5 mL of 1 × PBS and then centrifuged at 1,500 g. The supernatant was discarded, and the cells were resuspended in 1640 complete medium. The cell density was counted with a Cellometer K2 dual fluorescence cell analyzer (Nexcelom, San Diego, CA, USA), and seeded in cell culture bottles.
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9

Quantifying Adipocyte Viability

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Fat graft samples were digested for 1 hour at 37°C with gentle agitation in 200-U/mL collagenase (Sigma-Aldrich, St. Louis, Mo.) at a fat graft:solution ratio of 1:4 (v/v). Fat cells were harvested as described previously18 (link) and stained with a cell viability kit from Nexcelom (Nexcelom Bioscience LLC, Lawrence, Mass.). The number of live and dead cells was counted on a Cellometer K2 (Nexcelom).
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10

Real-time PCR sensitivity and specificity

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To measure the analytical sensitivity and specificity, an equal number of RD and L20B cells were mixed. Cell counts were performed using an automated Cellometer K2 cell counter (Nexcelom Bioscience, Lawrence, MA; USA). Nucleic acid was extracted, and concentration determined as described above. Serial dilutions of the extracted DNA (10,000pg/μL to 1pg/μL) were prepared and analyzed by the real-time PCR assay. To determine analytical sensitivity, five different concentrations of RD cells;10, 100, 1000, 10, 000 and 100,000 RD cells (0.001%, 0.01%, 0.1%, 1.0%, and 10%) were combined with L20B cells; 0.9–1.0 million/mL L20B cells (90% to 100%) and DNA was extracted and analyzed by the real-time PCR assay (100% L20B cells equal to 104 cells/PCR reaction). Reproducibility was evaluated by performing three independent DNA extractions and subsequent real-time PCR analysis. The analytical specificity was evaluated using limited number of different types of cell lines (n=13) from Human, Monkey, Mouse, and Rat (Table 1). For all analyses, each sample was analyzed in triplicate, in three independent runs.
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