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Peptide nucleic acid locked nucleic acid polymerase chain reaction clamp method

Manufactured by Mitsubishi
Sourced in Japan

The Peptide nucleic acid-locked nucleic acid polymerase chain reaction clamp method is a laboratory technique used for the detection and quantification of specific DNA sequences. It combines the use of peptide nucleic acid (PNA) and locked nucleic acid (LNA) probes to enhance the specificity and sensitivity of the polymerase chain reaction (PCR) process.

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3 protocols using peptide nucleic acid locked nucleic acid polymerase chain reaction clamp method

1

Molecular Profiling of Lung Cancer

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We used all of the data about the PD-L1 expression status and epidermal growth factor receptor (EGFR) and anaplastic lymphoma kinase (ALK) status from patient medical records. PD-L1, EGFR, and ALK were examined as follows. PD-L1 immunohistochemistry was carried out using the pharmDx antibody (clone 22C3, Dako North America, Inc., Agilent/Dako, Carpinteria, CA) in accordance with the manufacturer’s recommendations.35 (link) The EGFR status was assessed in tumor samples using the peptide nucleic acid-locked nucleic acid polymerase chain reaction clamp method (Mitsubishi Chemical Medience, Tokyo, Japan).36 (link) The ALK status was determined in tumor tissue using FISH with a Vysis ALK Break Apart FISH Probe Kit (Abbott Molecular, Des Plaines, IL).37 (link) This study could not include information about the presence of driver mutations other than EGFR and ALK, such as ROS1, BRAF, RET, MET, and HER2, because we were unable to obtain sufficient information about these mutations from patients’ medical records.
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2

Synchronous and Metachronous Lung Cancers

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One hundred fifty-two lung cancers from 59 patients who were treated at the Department of Surgery and Science, Graduate School of Medical Sciences, Kyushu University, between March 2003 and May 2016 were included in this translational study. The eligible patients included lung cancer patients who had multiple intrapulmonary nodules that were diagnosed as synchronous multiple primary lung cancer (MPLC), metachronous MPLC (second primary lung cancer), or pulmonary metastasis (PM). All of the lesions were resected and had to be available for an immunohistochemical analysis to detect PD-L1. Pathology staging was performed using the seventh edition of the TNM Classification of Malignant Tumors. In addition to the pathology stage, the patients' age, sex, performance status, smoking history, pathologic tumor and pathologic lymph nodal factors, pleural invasion, lymphatic invasion, vascular invasion, histologic subtype (2015 World Health Organization classification), surgical procedures, and EGFR mutation status were examined. In all specimens, the EGFR mutation status of the tumor tissue was determined using the peptide nucleic acid-locked nucleic acid polymerase chain reaction clamp method (Mitsubishi Chemical Medience, Tokyo, Japan). The present study was approved by our Institutional Review Board (Kyushu University, IRB no. 29-52).
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3

Biomarker Profiling for Cancer Treatment

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PD-L1 immunohistochemistry was performed using the pharmDx antibody (clone 22C3, Dako North America, Inc., Agilent/Dako, Carpinteria, CA, USA) [13 (link)]. PD-L1 data was categorized using the tumor proportion score (TPS). The EGFR status was assessed in tumor samples using the peptide nucleic acid-locked nucleic acid polymerase chain reaction clamp method (Mitsubishi Chemical Medience, Tokyo, Japan) [14 (link)], and the ALK status was determined in tumor tissue using fluorescence in situ hybridization (FISH) with a Vysis ALK Break Apart FISH Probe Kit (Abbott Molecular, Des Plaines, IL, USA) [15 (link)]. We extracted all data on the PD-L1 tumor expression and mutation status of driver oncogenes (EGFR and ALK) from patients’ medical records.
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