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10 protocols using 0.2 μm polyvinylidene fluoride membrane

1

Protein Expression Analysis of Ischemic Penumbra

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Total protein was extracted from the penumbral region of ischemic hemispheres, different conditions-treated ECs or BV2 microglia as described previously (Wang et al., 2016 (link)). Then, 20 μg of protein samples were subjected to 10–15% Bis-Tris gel electrophoresis and transferred onto a 0.2 μm polyvinylidene fluoride membranes (Millipore Corporation, United States). The membranes were blocked with 5% non-fat dry milk-TBS-0.1% Tween 20 for 2 h and washed. Then, the membranes were incubated with primary antibodies against TLR4, MyD88, p-p65, p65 (1:200, all from Santa Cruz, CA, United States), PPARγ, NLRP3, caspase-1, lba1, CD68 (1:1000, both from Abcam, United States), occludin, ZO-1 and β-actin (1:1000, all from Cell Signaling Technology, United States), overnight at 4°C. This was followed by incubation with appropriate horseradish conjugated secondary antibodies for 2 h. Immunoreactivity was detected by the BeyoECL Plus kit (Beyotime, China) on an image system (ChmiScope 2850; Clinx Science Instruments, China); band intensities were analyzed and calculated.
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2

Quantitative Western Blot Analysis

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MSCs were collected and homogenized in RIPA lysis buffer containing protease inhibitors (Solarbio, Shanghai, China), and a BCA Protein Assay Kit (Thermo Scientific) was used to quantify the total protein. The total proteins were diluted in 4× SDS-PAGE loading buffer, boiled for 10 min, electrophoresed on 10% polyacrylamide gels, and blotted on 0.2 μm polyvinylidene fluoride membranes (Millipore, Darmstadt, Germany). After blocking with 5% nonfat milk for 2 hr at room temperature, the blots were incubated with primary antibodies overnight at 4°C followed by secondary antibodies at room temperature for 2 hr. An anti-6×His tag (β-GALH363A) antibody was used. Signals were generated by using enhanced chemiluminescence reagent (Millipore, USA) and were captured by using a Tanon-5200 Chemiluminescence Imaging System (Tanon Science & Technology Co Ltd., Shanghai, China). Quantification was performed using ImageJ software. Antibodies are listed in Supplementary file 1.
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3

Protein Expression Analysis of Metacestode Host Tissues

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Host tissues from around metacestodes were lysed on ice using radioimmunoprecipitation assay buffer (Thermo Scientific) containing phenylmethylsulfonyl fluoride, and the lysates were centrifuged at 4 °C and 12,000 r.p.m. for 10 min. The supernatant was collected, diluted in 5× loading buffer and boiled in a 95 °C water bath for 10 min. The prepared protein samples were preserved at − 80 °C after measurement of the protein concentration. The protein samples were subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis at 20 μg per lane and transferred to 0.2-μm polyvinylidene fluoride membranes (Merck Millipore, Darmstadt, Germany). Nonspecific antigens on the membrane were blocked with Tris-buffered saline 0.05%—Tween 20 containing 5% nonfat milk at room temperature for 1 h. The polyvinylidene fluoride membranes were subjected to immunoblotting with primary antibodies against MMP2 (1:1000; Abclonal, Wuhan, China), MMP9 (1:1000; Abclonal) and β-actin (1:1000; Abclonal) at 4 °C overnight. The next day, they were washed and incubated with horseradish peroxidase-labelled goat anti-rabbit IgG (1:5000) at room temperature for 1 h. After washing, an enhanced chemiluminescence (Thermo Scientific) method was used to expose the bands, and the greyscale values were normalized to that of β-actin.
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4

Colon Tissue Protein Analysis

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Proteins extracted from the colon tissue were separated by 8–12% SDS-PAGE after the concentration was detected by the BCA protein assay kit (CW0014S, CoWin Biotech Co., Inc., Beijing, China). They were then transferred to 0.2 μm polyvinylidene fluoride membranes (Merck KGaA Co., Ltd., Darmstadt, Germany). Membranes were blocked with 5% skim milk for 1.5 h. After blocking, the membranes were incubated with anti-claudin 1 antibody (1/3000, Abcam Co., Inc., Cambridge, UK) and anti-claudin 3 antibody (1/1000, Abcam Co., Inc., Cambridge, UK) at 4 °C overnight. The membranes were washed with Tris-buffered saline Tween (TBST) and then incubated with horseradish peroxidase-conjugated goat anti-mouse IgG, or goat anti-rabbit IgG (CoWin Biotech Co., Inc., Beijing, China) for 1.5 h. The membranes were imaged with a Tanon 5200 imaging system (Tanon Science & Technology Co., Ltd., Shanghai, China).
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5

Colon Tissue Protein Analysis by Western Blot

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Proteins extracted from the colon tissue were separated by 8–12% SDS-PAGE after the concentration was detected by the BCA protein assay kit (CW0014S, CoWin Biotech Co., Inc., Beijing, China). They were then transferred to 0.2 μm polyvinylidene fluoride membranes (Merck KGaA Co., Ltd., Darmstadt, Germany). Membranes were blocked with 5% skim milk for 1.5 h. After blocking, the membranes were incubated with different primary antibodies at 4 ℃ overnight. Claudin 1 (1/3000, Abcam Co., Inc., Cambridge, UK), Claudin 3 (1/1000, Abcam Co., Inc., Cambridge, UK), Occludin (1/1000, Abcam Co., Inc., Cambridge, UK), ZO-1 (1/1000, Abcam Co., Inc., Cambridge, UK), TRL-4(1/1000, Proteintech Co., Wuhan, China), IKB(1/1000, Abmart Co., Inc, Shanghai, China), p65(1/5000, Abmart Co., Inc, Shanghai, China), p-IKB(1/1000, Abcam Co., Inc., Cambridge, UK), pp65(1/1000Abcam Co., Inc., Cambridge, UK), β-actin(1/1000, LABLEAD Biotech Co., Ltd., Beijing, China). Then, the membranes were washed with Trisbuffered saline Tween (TBST) and then incubated with horseradish peroxidase-conjugated goat anti-mouse IgG, or goat anti-rabbit IgG (CoWin Biotech Co., Inc., Beijing, China) for 1.5 h. The membranes were imaged with a Tanon 5200 imaging system. (Tanon Science & Technology Co., Ltd., Shanghai, China)
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6

Protein Extraction and Western Blot Analysis

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The PDLSCs washed with prechilled phosphate-buffered saline (PBS) were lysed in a radioimmunoprecipitation assay buffer (Solarbio Science, China) containing 1% phenylmethylsulfonyl fluoride (Solarbio Science, China) for 5 min at 4 °C, followed by three cycles of 5 s sonication on ice. The cell lysate was centrifuged at 12,000 rpm at 4 °C for 15 min to obtain the protein lysate. The proteins were denatured, separated in a 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) gel, and transferred to a 0.2-μm polyvinylidene fluoride membrane (Millipore, USA). The membrane was blocked with 5% skimmed milk in Tris-buffered saline containing 0.1% Tween-20 (TBS-T) at pH 7.2, then incubated overnight at 4 °C with primary antibodies of choice. After washing three times with TBS-T, the membrane was incubated for 1 h with horseradish peroxidase (HRP)-conjugated secondary antibodies of choice at room temperature and washed again with TBS-T. Protein bands were visualized by an Amersham Imager 600 (General Electric, USA) with ECL Western Blotting Substrate (Biosharp, China). Densitometric quantification of the protein bands was conducted by using ImageJ (National Institutes of Health, USA). All primary and secondary antibodies used for western blot in this study are listed in Table 1.
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7

Protein Expression Analysis by Western Blot

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Cells were lysed in Nonidet P-40 lysis buffer with phenylmethanesulfonyl fluoride and protease inhibitor. Boiled samples of cell lysate with loading buffer were electrophoresed and transferred onto a 0.2μm polyvinylidene fluoride membrane (Millipore, USA). Membranes were blocked with 5% nonfat dry milk for 1 h at room temperature followed by incubation with primary antibodies overnight at 4°C. Then the membranes were incubated with secondary antibodies for 1 h at room temperature and were detected with an enhanced chemical luminescence kit (Beyotime technology, China). Antibodies are shown in Supplementary Table 2.
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8

Immunoblot analysis of 35S:3XFLAG-OsLEC1

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About 0.1 g callus from 35S:3XFLAG-OsLEC1 seeds cultured on CIM for 30 days were ground in liquid nitrogen and resuspended in the extraction buffer as previously reported (Zhang et al., 2020 (link)). Then the protein samples were resolved by 4–20% gradient SDS-PAGE and transferred to a 0.2-μm polyvinylidenefluoride membrane (Millipore). Proteins were detected with a primary anti-FLAG antibody and incubated with a secondary antibody as previously reported (Guo et al., 2021 (link)).
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9

Western Blot Protein Analysis

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Equal amounts of protein samples were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) on an 8-15% bis-tris gel and electrophoretically transferred onto 0.2μm polyvinylidene fluoride membrane (Merck Millipore, Darmstadt, Germany). Membranes were blocked with 5% non-fat milk and sequentially incubated with primary and horseradish peroxidase (HRP)-conjugated secondary antibodies. Bound antibodies were visualized using enhanced chemiluminescent substrate (ECL; Thermo Scientific, Waltham, MA). Relative quantities of protein were determined by densitometry using Quantity One® (Bio-Rad).
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10

Protein Isolation and Western Blot Analysis

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Tissue or cell samples were prepared in lysis buffer containing 1% Triton X-100 and a mixture of protease inhibitors, and quantified using Pierce BCA protein assay kit (Thermo scientific, Rockford, IL). Proteins from supernatants were isolated by precipitation. 500 μl of supernatant was mixed with 500 μl of methanol and 150 μl of chloroform, respectively, and centrifuged at 14,000 rpm for 10 min. The aqueous phase was discarded and the protein pellet was washed with 800 ul methanol to dry the pellet and added with 20–50 μl lysis buffer. Equal amounts of protein samples were separated by SDS-PAGE on an 8–15% bis-tris gel and electrophoretically transferred onto 0.2 μm polyvinylidene fluoride membrane (Merck Millipore, Merck KGaA, Darmstadt, Germany). Membranes were blocked with 5% non-fat milk and sequentially incubated with primary and HRP-conjugated secondary antibodies. Bound antibodies were visualized using enhanced chemiluminescent substrate (ECL; thermo scientific, Waltham, MA).
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