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5 protocols using pmapk thr202 tyr204

1

Characterization of FLT3 Mutations

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DNA constructs and vectors were used as described before [9] (link), [25] (link). FLT3-I867S and FLT3-D839G constructs were generated using QuikChange II XL Site-Directed Mutagenesis Kit (Agilent, Santa Clara, CA). Denotation: W78: ITD1, Npos: ITD2, W51: ITD3. Figure S1 displays the locations and insertions respectively substitutions of the analyzed mutations.
The following antibodies were used: FLT3 (S18) and goat anti-mouse secondary antibody from Santa Cruz Biotechnology (Santa Cruz, CA). AKT, MAPK, pSTAT5 (Tyr694), pAKT (Ser473) and pMAPK (Thr202/Tyr204) all from Cell Signaling Technology (Danvers, MA). STAT5 from R&D Systems (Minneapolis, MN). β-actin and goat anti-rabbit secondary antibody from Sigma-Aldrich (St. Louis, MO). CD-135-PE from Beckman Coulter (Brea, CA). IgG1 PE Isotype control from BD Pharmingen (BD Bioscience, Franklin Lakes, NJ).
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2

Protein Immunodetection and Analysis Protocol

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The following antibodies were used in this study: anti-Girdin (R&D Systems, Minneapolis, MN, #AF5345, for WB and IP), anti-4F2hc (H300, Santa Cruz Biotechnology, Santa Cruz, CA, for WB, clone MEM-108, Biolegend [#315602] for IP, and mouse monoclonal anti-4F2hc [clone HBJ 127] for IF), anti-glutathione S-transferase (GST) (Santa Cruz Biotechnology, #sc-459), anti-Myc (clone 9E10, Santa Cruz Biotechnology), anti-poly-histidine (clone HIS-1, Sigma, St. Louis, MO), anti-Flag (clone M2, Sigma), anti-β-actin (clone AC-74, Sigma), normal mouse IgG (Millipore, Milford, MA, #12–371), and normal sheep IgG (Millipore, #12–515). Antibodies to pS6K (Thr389) (#9205), S6K (#9202), S6 (#2217), pS6 (Ser240/244) (#2215), MAPK (#9102), pMAPK (Thr202/Tyr204) (#9106), Lamp1 (#9109), mTOR (#2983), and LC3B (#2775) were purchased from Cell Signaling Technology (Danvers, MA). Flag M2 affinity gel, adenosine 5′-triphosphate (ATP), and amino acids were purchased from Sigma. Phos-tag Acrylamide (Wako, Saitama, Japan) was used for the generation of the Phos-tag gel to analyze protein phosphorylation in cells.
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3

Signaling Pathway Protein Analysis

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Antibodies were purchased from Cell Signaling (Beverly, MA): anti- AKT (CS#4691), p-AKT (Ser473) (CS#9271), p-AKT (Thr308) (CS #4056), mTOR, p-mTOR (Ser2448) (CS#2971), PDK1 (CS#13037), p-PDK1(Tyr373/376) (bs-3017R), p-PDK1(Ser241) (CS#3061), MAPK (CS#4695), p-MAPK (Thr202/Tyr204) (CS#4370), PTEN (CS#9559), p-PTEN (CS#9549), YAP (CS#4912), p-YAP (s127) (CS#13008), p-YAP (s397) (CS#13619). Monoclonal anti-β-actin (Sigma#A5449) was purchased from Sigma-Aldrich (St Louis, MO).
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4

Investigating Cellular Signaling Pathways

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The following reagents were used: Tris, glycine, sodium dodecyl sulfide and bovine serum albumin (BSA) (Sigma). Antibodies included: p-MAPKThr202/Tyr204, p-AKTSer473, p-mTORSer2448, p-S6KThr389 and p-4E-BP1Thr37746 (Cell signaling Technology); β-actin and myogenin (Genetex); myoD1 (Proteintech); vimentin, cytokeratin 8, Ki-67 and α-SMA (Abcam) and desmin (Servicebio Co. Ltd., China). Experiments were performed under a project license (NO.: L201501027) granted by ethics board of Sun Yat-sen University, in compliance with all national and/or institutional guidelines for the care and use of animals.
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5

Capmatinib Regulation of Met and Downstream Signaling

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Whole-cell lysates were collected in a RIPA buffer containing
protease/phosphatase inhibitor cocktail (Cell Signaling Technology). Mouse
derived cell lines were grown to 90% confluency overnight by seeding plates with
50,000 – 75,000 cells. Cells were then serum starved for 24 hours and
then treated with capmatinib for 2 hours followed by 100ng/mL of HGF for 15
minutes. Cells were then washed with PBS and harvested in RIPA buffer plus
protease inhibitor cocktail (Roche). Lysates (20 μg) were resolved on a
4%−20% TGX SDS-PAGE gel (Bio-Rad) and transferred to a PVDF membrane
(Invitrogen). After blocking for 1 hour with 5% dry milk in TBST buffer (20
mmol/L Tris-HCl pH 7.4, 150 mmol/L NaCl, 0.1% Tween-20), blots were probed
overnight at 4°C with the following primary antibodies from Cell
Signaling Technology: Met (25H2; #3127), pMET (D26; #3077), AKT (#9272), pAKT
(S473; #9271), MAPK (#9102), pMAPK (Thr202/Tyr204; #9101), and β-tubulin
(#2146). Blots were reacted with peroxidase- conjugated antibody for 1 hour
(Cell Signaling Technology) and visualized using ECL detection (Amersham).
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