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4 protocols using plan apochromat oil immersion objective

1

Imaging Spermatheca Dynamics in C. elegans

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For DIC and fluorescence microscopy imaging of spermatheca dynamics, day 1 adult hermaphrodites with one row of embryos were mounted on glass slides with 10% agarose pads, which served to immobilize them, and 1.38 µl of M9 medium. Image acquisition was performed at 20°C on a Ti-Eclipse inverted microscope (Nikon) equipped with a CSU-X1 spinning-disk confocal head (Yokogawa Electric Corporation), DPSS-Laser (Roper Scientific) of 491- and 561-nm excitation wavelengths and an Evolve electron multiplying charged-coupled device camera (Photometrics). Focus drift during time-lapse acquisition was corrected using Perfect Focus System (Nikon). Acquisition control was performed using MetaMorph (Molecular Devices). Ovulation and embryo transit movies were acquired with a 60× 1.4 NA oil-immersion Plan-Apochromat objective (Nikon). Live super-resolution imaging of protein localization in the spermatheca (Fig. 6, A and B; and Fig. S5) was performed on a Ti-2 Eclipse with a Live-SR module (Gataca systems, France) mounted on the light path of a CSU-W1 spinning disk, a 100× 1.45 NA oil-immersion Plan-Apochromat objective (Nikon, Japan), and a Prime95B SCMOS camera (Photometrics). Actin stress fibers in the spermatheca (Fig. 2 H and Fig. 7 A) and embryos images (Fig. 1 B and Fig. 5 C) were acquired with a 100× 1.45 NA oil-immersion Plan-Apochromat objective (Nikon).
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2

Immunofluorescence Imaging of Chromatin and Nuclear Proteins

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Cells were fixed and prepared for indirect immunofluorescence and confocal microscopy as previously described11 ,26 (link).
Images were acquired on a Nikon Ti-E inverted microscope (Nikon) with a Yokogawa CSU-22 spinning disk confocal head with the Borealis modification or a Ti2 inverted microscope fitted with a CSU-W1 spinning disk. Z-stacks of 0.4–0.7 μm spacing were collected using a CoolSnap HQ2 CCD camera (Photometrics) or a Zyla 4.2 sCMOS camera (Andor) with a ×60/1.40 NA or a ×100/1.45 NA Plan Apochromat oil-immersion objective (Nikon).
The following antibodies were used for indirect immunofluorescence imaging: phospho γH2AX (Ser139) (Millipore, 05-636-I; 1:400); H3K27ac (Active Motif, 39133; 1:200); MDC1 (Abcam, ab11171; 1:1,000); MDC1 (Sigma-Aldrich, M2444; 1:1,000); phospho RNA PolII S5 (Millipore, MABE954, clone 1H4B6; 1:400); Cdk9 (Cell Signaling, 2316; 1:10); CDK12 (Abcam, ab246887; 1:400); 53BP1 (Santa Cruz, 22760S; 1:100); H3K27me3 (ThermoFisher Scientific, MA511198; 1:1,000); H3K9ac (Cell Signaling, 9649S; 1:400); H3K9me2 (Cell Signaling, 9753S; 1:400); POM121 (Proteintech, 15645-1-AP; 1:200); phospho H3T3 (Millipore, 07-424, 1:12,000); phospho H3S10 (Abcam, ab47297; 1:200); and fibrillarin (Abcam, ab4566; 1:500). Staining of Dam-methylated DNA in fixed cells was done using purified GFP-tagged m6A-Tracer protein as previously described53 (link).
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3

Spinning Disk Confocal Microscopy Imaging

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Imaging was performed on a spinning disk confocal microscope (Nikon Ti-E with a Yokogawa CSU-22 confocal head with the Borealis modification). Z-stacks of nine images at 0.5-μm spacing were collected using a CoolSnap HQ2 CCD camera (Photometrics) or a Prime BSI back-thinned sCMOS camera (Photometrics), with a 60×/1.40 NA or a 100×/1.45 NA Plan Apochromat oil immersion objective (Nikon).
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4

Endocytosis Inhibition in Cell Samples

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After encapsulation, cell suspension (0.2 mL) was centrifuged for 10 min at 5100×g and 25 °C and 0.2 mL of water-glycerol solution at 15.0 MPa and 4 °C was added to the cells to stop natural endocytosis (Dupont et al. 2010; (link)Marechal et al. 1995; (link)Pedrini et al. 2014 (link)). The samples were protected from light and kept in ice during analysis. A Nikon Eclipse TE 2000 U microscope (Nikon, Tokyo, Japan) with multispectral confocal head D Eclipse C1 was used to observe cells stained with fisetin. Excitation was performed at 488 nm with laser He/Ar, and the emission signal was recovered between 490 and 670 nm. Images were acquired with a ×100 (NA: 1.4) Plan
Apochromat oil-immersion objective (Nikon) and collected with NIS software 3.1 (Nikon).
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