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9 protocols using anti cyclin b1

1

Plk1 Regulation of Pentose Phosphate Pathway

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Antibodies and reagents used in the study are listed as following: anti-Plk1 (Sigma-Aldrich, P5998, 1:10,000), anti-Flag (Sigma, F3165, 1:5000), anti-HA (Sigma, H9658, 1:5000), anti-G6PD (Protein-tech, 25413-1-AP, 1:1000), anti-G6PD (Abcam, ab993, 1:1000), anti-glutathione S-transferase (anti-GST; Protein-tech, 10000-0-AP, 1:5000), anti-phospho-H3Ser10 (Millipore, 06-570, 1:1000), anti-cyclin B1 (Protein-tech, 55004-1-AP, 1:1000), anti-phospho-threonine (Millipore, AB1607, 1:1000), anti-PGLS (Santa Cruz, SC-398833, 1:1000), anti-6PGD (Protein-tech, 14718-1-AP, 1:1000), anti-CDK2 (Protein-tech, 10122-1-AP, 1:1000), rabbit IgG (Protein-tech), mouse IgG (Santa Cruz), and anti-Actin (Protein-tech, 60008-1-Ig, 1:5000). NADP+, NADPH, GSH, G6P, 6PG, NAC, Dox, tetracycline, HU, propidium iodide, nocodazole, 4,6-diamidino-2-phenylindole (DAPI), casein, D2O, ribonucleosides, and deoxyribonucleosides were purchased from Sigma-Aldrich; R5P, nucleotides (AXP, GXP, CXP, and UXP, X = M, D, and T) were purchased from Sangon Biotech. BI2536 was purchased from Selleck Corporation, PP2A was from Millipore, and human recombinant Plk1 was from Sino biological company. [2-13C]-glucose and [U-13C]-glucose were from Cambridge Isotope Laboratories. γ-32P ATP was from China Isotope & Radiation Corporation.
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2

Comprehensive Antibody Inventory for Cell Analysis

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Anti‐Ezrin/radixin/moesin (ERM), anti‐phospho (p) Ezrin (at Thr567)/radixin (at Thr564)/moesin at Thr558) (pERM), anti‐poly (ADP‐ribose) polymerase 1 (PARP1), and anti‐vimentin antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti‐EBP50, anti‐β‐actin, anti‐MYH9 (mouse), anti‐vinculin, and anti‐Sox2 antibodies were obtained from Abcam (Cambridge, MA, USA). Anti‐E‐cadherin, anti‐p21waf1, and anti‐cyclin D1 antibodies were from Dako (Copenhagen, Denmark). Anti‐cyclin A2 and anti‐cyclin E antibodies were from Novocastra (Newcastle, UK). Anti‐p27kip1, anti‐aldehyde dehydrogenase 1 (ALDH1), and anti‐N‐cadherin antibodies were from BD Biosciences (San Jose, CA, USA). Anti‐MYH9 (Rabbit) and anti‐cyclin B1 antibodies were purchased from Proteintech (Rosemont, IL, USA) and Santa Cruz Biotech (Santa Cruz, CA, USA), respectively. Blebbistatin and MG132 were obtained from Toronto Research Chemicals (North York, ON, Canada) and Sigma‐Aldrich Chemicals (St. Louis, MO, USA), respectively.
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3

Western Blot Analysis of GC Cell Proteins

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In a radio-immunoprecipitation assay (RIPA) lysis buffer, the proteins were extracted from GC cells. Ten percents of polyacrylamide sodium dodecyl sulfate (SDS) gels (SDS-PAGE) were used to separate equivalent amounts of proteins. The proteins were then blotted onto membranes of polyvinylidene fluoride (Amersham, UK). After membranes were blocked at RT (37°C) in bovine serum albumin (5%) for 1 h, primary antibodies were used to culture the membranes overnight. After being cultured, they were placed in secondary antibodies conjugated with human resource planning (Perbio Science, Belgium), and incubated at RT (37°C) for 1 h. The system of enhanced chemiluminescence immunodetection (Immobilon, USA) was used to visualize immunoreactive proteins. The antibodies for Western blotting were as follows: anti-KIF22 (13403-1-AP; Proteintech Group, USA), anti-Phospho-MEK1/2 (CST: #9154; Proteintech Group), anti-MEK (CST: #8727; Cell Signaling Technology, USA), anti-Phospho-ERK1/2 (CST: #4370; Proteintech Group), anti-ERK (16443-1-AP; Proteintech Group), anti-Cyclin A2 (18202-1-AP; Proteintech Group), anti-Cyclin B1 (55004-1-AP; Proteintech Group), anti-Cyclin D1 (26939-1-AP; Proteintech Group), anti-P21 (10355-1-AP; Proteintech Group), and β-actin (20536-1-AP; Proteintech Group).
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4

Western Blot Analysis of Protein Markers

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Whole cell proteins were harvested and the protein concentrations were measured using a BCA kit (Pierce; Thermo Fisher Scientific, Inc). And equal protein (30 μg) was separated with 10% SDS‐PAGE and transferred onto nitrocellulose membranes (EMD Millipore), subsequently, the membranes were then blocked in 5% non‐fat dry milk for 2 hours at room temperature. The membrane was incubated with primary antibodies at 4°C overnight, and the membrane was washed with TBST and incubated with anti‐HPR‐conjugated Affinipure goat anti‐rabbit/mouse lgG(H+L) (1:5000, Proteintech Group, Inc). The signals were detected using an ECL Western blotting kit. The primary antibodies used included: Anti‐B3GNT5 (1:500), anti‐GAPDH (1:3000), anti‐cyclinD1 (1:500), anti‐cyclinB1 (1:500 proteintech), anti‐EGFR (1:1000) (Proteintech Group, Inc) anti‐ERK (1:1000), anti‐p‐ERK (1:500) (Cell Signaling Technology, Inc); AKT (1:1000, Beyotime Institute of Biotechnology) and p‐AKT(Ser473) (1:500, Beyotime Institute of Biotechnology).
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5

Protein Extraction and Western Blotting Protocol

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The tissue and cell proteins were isolated using radio immunoprecipitation assay (RIPA) lysis buffur (Epizyme Biotech) supplemented with protease inhibitor. The Bradford method (CWBIO) was used to determine the protein concentrations. Proteins were electrophoresed on Sodium dodecylsulfate-polyacrylamide gel electrophoresis (SDS-PAGE, CWBIO), then transferred to polyvinylidene fluoride (PVDF) membranes, blocked, and incubated with primary anti-FANCE (Biobryt, 1:10000), anti-FANCD2 (1: 5000; Novus Biologicals), anti-GAPDH (1:10000, bioworld), anti-β-tubulin (1:10000, proteintech), anti-RAD51(1:5000, Abcam), anti-γH2AX (1:10000, Abcam), anti-cyclin dependent kinase 4 (CKD4) (1:5000, proteintech), anti-cyclin dependent kinase 6 (CDK6) (1:5000, proteintech), anti-cyclin D1 (1:5000, proteintech), anti-cyclin B1(1:5000, proteintech), anti-cyclin E(1:5000, proteintech) and anti-cyclin A2(1:5000, proteintech) for overnight at 4℃. Secondary antibodies were incubated for 2 h the next day. The protein bands on the membranes were detected using Enhanced Chemiluminescent (ECL, NCM Biotech).
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6

Immunoprecipitation and Western Blot Analysis

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Whole-cell lysates were obtained by re-suspending cell pellets in RIPA buffer (50 mM Tris pH 7.4, 150 mM NaCl, 1% Triton X-100) with freshly added protease inhibitor (Roche) as previously described47 (link),48 (link). Specific antibodies or pre-immune IgGs (P.I.I.) were added to and incubated with cell lysates overnight before being absorbed by Protein A/G-plus Agarose beads (Santa Cruz). Precipitated immune complex was released by boiling with 1X SDS electrophoresis sample buffer. Western blot analyses were performed with anti-BRG1 (Santa Cruz, sc-10768), anti-Cyclin B1 (Proteintech, 55004-1), anti-LTBP2 (Sigma, HPA003415), anti-KDM3A (Proteintech, 12835-1), anti-HA (Sigma, H3663), anti-FLAG (Sigma, F3165), anti-His (Invitrogen, MA1-21315), anti-GFP (Proteintech, 50430-2), anti-Myc (Santa Cruz, sc-40), and anti-β-actin (Sigma, A2228) antibodies. All experiments were repeated three times.
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7

Western Blot Analysis of Cell Signaling

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Cells were lysed using RIPA buffer (Solarbio) and protein concentrations of cell lysates measured in terms of absorbance (OD562) with a BCA protein-assay kit (Biotech Well, Shanghai, China). Total proteins were separated using SDS-PAGE of appropriate density, then transferred onto a polyvinylidene difluoride membrane at 90 mV for 1.5 hours. The blots were blocked and incubated overnight with the primary antibody at 4°C, and then incubated with the secondary antibody for 1.5 hours at room temperature. The primary antibodies and their dilutions were anti-MYBL2 (1:1,000; Abcam), anti-CDK1, anti-cyclin B1, anti-p21 (1:500; Proteintech), and anti-β-actin (1:1,000; Proteintech). Secondary antibodies (1:2,000) were purchased from Bioss (Shanghai, China). All experiments were repeated three times.
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8

Western Blot Analysis of Cellular Proteins

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A western blot assay was performed using protein extracted from cultured cells and tissues. Protein samples were separated using 10% and 12% SDS-PAGE and subsequently transferred onto PVDF membranes with a pore size of 0.22μm. The membrane was blocked using 5% skim milk and a primary antibody was then incubated overnight at 4 °C on the membranes. The primary antibodies were used as follows: anti-CENPW (1:1,000, 1030382-3; Abcam, United Kingdom), anti-βactin (1:10,000; 60004-1-Ig; Proteintech, Wuhan, China), anti-Cleavedcaspase 3 (1:1,000, #9661S; Zenbio, Chengdu, China), anti-CyclinB1 (1:1,000, 60186-1-Ig; Proteintech, Wuhan, China), anti-CDK1 (1:1,000, 11554-1-AP; Proteintech, Wuhan, China), anti-Bcl-2 (1:1,000, #2872T; CST, United States), anti-P21 (1:1,000, 50599-2-Ig; Proteintech, Wuhan, China), anti-Bax (1:1,000, 50599-2-Ig; Proteintech, Wuhan, China), and anti-STAT3 (1:1,000, #9139; CST, United States), anti-p-STAT3 (Tyr705) (1:2000, #9145; CST, United States). A chemiluminescence system was employed to detect protein bands subsequent to the incubation of primary antibody probes with secondary antibodies. The scanned blots were subjected to analysis using ImageJ version 1.51 in order to ascertain the density of the bands. Protein expression was normalized by comparing it to the expression of β-actin.
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9

Comprehensive Western Blotting Protocol

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Western blotting method was used in the following experiment [14 (link), 15 ], loading 25 μg of total protein lysate per lane. The following primary antibodies were used: anti-HDAC7 (1:1000, #33,418, CST), anti-c-Myc (1:1000, #5605, CST), anti-CDK1 (1:1000, 19,532-1-AP, Proteintech), anti-Cyclin B1 (1:1000, 55,004-1-AP, Proteintech), anti-CDK2 (1:1000, 10,122-1-AP, Proteintech), anti-CyclinA2 (1:1000, 18,202-1-AP, Proteintech), anti-E-cadherin (1:1000,#14,472, CST), anti-Zeb1 (1:1000, 21,544-1-AP, Proteintech), anti-α-SMA (1:1000, 14,395-1-AP, Proteintech) and anti-β-actin (1:1000, #3700, CST). The secondary antibodies used were HRP-linked anti-IgG antibodies (1:5000, Zhongshan Company, Beijing, China).
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