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5 protocols using fix buffer

1

Liver Trm Cell Isolation and Characterization

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In brief, livers were removed, homogenized and filtered through a 100μ cell strainer. Hepatocytes were pelleted and separated from the single cell suspension above by centrifugation at 60g, 3 mins. The supernatant was pelleted and purified using 35% Percoll (GE Healthcare) in HBSS (Gibco). RBCs were lysed and enriched lymphocytes were stained with MHC-I tetramer for GAP50 and incubated in the presence of Fc-Block (aCD16/32) at 4°C for 45 minutes prior to cell surface staining. Cells were stained for cell surface markers with appropriate antibodies in FACS buffer for 30 minutes and fixed in fix buffer (BD) prior to acquisition on an LSR Fortessa (BD Biosciences). Live, liver Trm populations were enumerated based on the expression pattern of the following cell surface markers as previously described (CD8α+ CD11ahi, CD62L CD69+ CXCR3+ CXCR6+) (Fernandez-Ruiz et al., 2016 (link)). Flow cytometry data was analyzed with Flowjo (Treestar).
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2

Immune Cell Isolation and Characterization

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Cells were isolated and stained as previously described (Doll et al., 2016 ). In brief, spleen, popliteal, portal and celiac lymph nodes were removed, homogenized with glass coverslips in RPMI + 10% FCS, filtered through a 70μ cell strainer and where applicable, MHC-I tetramers for PbT or GAP50 (prepared in house as described (Doll et al., 2016 )) were incubated in the presence of Fc-Block (aCD16/32) at 4°C for 45 minutes prior to cell surface staining. Cells were stained for cell surface markers with appropriate antibodies in FACS buffer for 30 minutes and fixed in fix buffer (BD) prior to acquisition on an LSR Fortessa (BD Biosciences). Flow cytometry data was analyzed with Flowjo (Treestar). Peptide restimulation and Intracellular staining for cytokines and BrdU were performed as described before(Martin et al., 2012 ).
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3

Cas9 Protein Expression Quantification

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In all, 2 × 105 cells (Cas9-transduced and parental cells) were fixed (Fix buffer, BD Phosflow), permeabilized (Perm buffer III, BD Phosflow) and incubated with anti-Cas9 followed by PE-conjugated anti-mouse-IgG1. Stainings were measured on a FACScanto II flow cytometer system (BD Biosciences, San Jose, CA, USA) interfaced to FACS Diva software (v6.0), and analyzed with Flow Jo (v7.6.5).
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Apoptosis and T-cell Activation Assay

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AnnexinV-FITC/PI Kit (KeyGen Biotechnology, Nanjing, China) was used to evaluate the effect of FICZ and ITE on the apoptosis of PBMCs. For analysis of the frequency of Th1 and Th17, the cells were stimulated by adding PMA (50 ng/mL, Sigma-Aldrich, St. Louis, MO) and ionomycin (1 ug/mL, Sigma) for 1 h at 37°C. Then, brefeldin A (10 ug/mL, Sigma) was added for another 4 h; the cells were fixed and permeabilized using the eBioscience Cytofix/Cytoperm kit according to the manufacturer's instructions and then incubated with CD3-(PerCP)-Cy5.5, anti-human CD8-APC, anti-human IL-17A-PE, and anti-human IFN-γ-FITC (BD Biosciences). For phosphorylated STAT staining, stimulated CD4+T cells were fixed with Fix buffer (BD Biosciences) for 10 min at 37°C, permeabilized with Perm buffer (BD Biosciences) for 30 min on ice, and stained with anti-human pSTAT3-PE, anti-human pSTAT4-Per-cy5.5, anti-human pSTAT4-Per-cy5.5, anti-human pSTAT5-PE, or isotype control mAbs (BD Biosciences). Flow cytometric analysis was performed on a FACScan flow cytometer (BD Biosciences) to measure mean fluorescence intensity (MFI). Results were expressed as the percentage difference compared with isotypic control (IC) using the formula [mean fluorescence intensity (MFI) of sample − MFI of IC]/MFI of IC.
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5

Cell Viability Assay using IFN-α and IFN-λ3

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Confluent PK-15, PoREC, IPEC-J2 cells were treated with 300ng/ml IFN-α or IFN-λ3 for 24h, incubated for 20 min at 37°C with accutase and collected in 96-well V-bottom plates. Cells were washed two times in PBS between each step. Cells were fixed with Fix buffer (BD Biosciences) for 20min at 4°C as positive control for propidium iodide (PI) staining, which was used to measure cell viability. Flow cytometry was performed using a NovoCyte Flow Cytometer (ACEA Biosciences, Agilent, Santa Carla, CA, USA), and samples were analyzed with NovoExpress software (ACEA Biosciences).
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