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Abi 7500 real time pcr system

Manufactured by Agilent Technologies
Sourced in United States

The ABI 7500 Real-Time PCR System is a laboratory instrument designed for quantitative real-time PCR analysis. It is capable of performing DNA amplification and detection in a closed-tube format, allowing for precise and sensitive quantification of target nucleic acid sequences.

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8 protocols using abi 7500 real time pcr system

1

Quantifying lncRNA BACE1-AS and miR-214-3p

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After treatment, the level of lncRNA BACE1-AS and miR-214-3p were assessed using qRT-PCR. Total RNA was obtained from SH-SY5Y cells using RNA-isolation kit (cat. no. 9108; Takara, Beijing, China) in accordance with protocol. Then the total RNA was reversed to cDNA following the instructions of PrimeScript RT Reagent Kit (cat. no. RR037B; Takara) and qRT-PCR analysis was conducted using the DyNAmo HS SYBR Green qPCR Kit (cat. no. F410L, Thermo Scientific) with ABI 7500 Real-Time PCR System (Agilent Technologies, USA). The relative quantification of target genes was analyzed using 2−ΔΔCt method [20 (link)]. Primer sequences were listed as following:
U6 forward, 5′-GCTTCGGCAGCACATATACTAAAAT-3′;
reverse, 5′-CGCTTCACGAATTTGCGTGTCAT-3′;
GAPDH forward, 5′-CTTTGGTATCGTGGAAGGACTC-3′;
reverse, 5′-GTAGAGGCAGGGATGATGTTCT-3′;
lncRNA BACE1-AS forward, 5′-GGCACCTCCTAAGTGTACCTGC-3′;
reverse, 5′-CTCTCTGCTGGGCACGATTC-3′;
miR-214-3p forward, 5′-GCATCCTGCCTC CACATGCAT-3′;
reverse, 5′-GCGCTGAGGAATAATAGA GTATGTAT-3′;
CDIP1 forward, 5′-GACTTCAGCCTTTTGTTCATGG-3′;
reverse, 5′-TCTTTGCTGTTGATACTCCTGG-3′.
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2

Quantification of Notch Pathway Genes

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Following treatment, the levels of CYP2J2, Dll4, Jagged1, Notch1, Hes1/5, Hey1, and GAPDH were measured by RT-qPCR . RNA was isolated from HRVECs using the RNA-isolation kit (Life Technologies, USA) following the manufacturer’s protocol. Total RNA was reverse transcribed to cDNA using the PrimeScript RT Reagent Kit (TaKaRa, China) following the manufacturer’s instructions, and RT-qPCR was performed using the SYBR PrimeScript RT-PCR Kit (TaKaRa) with an ABI 7500 Real-Time PCR System (Agilent Technologies, USA). Target gene expression was quantified using the 2−ΔΔCt method [16 (link)]. Primer sequences were listed as following:
CYP2J2, forward 5ʹ-TCCATCCTCGGACTCTCCTAC-3ʹ;
Reverse5ʹ-GTCACCAAGCTCCAAGCTAAAA-3ʹ;
Dll4,forward5ʹ-GTCTCCACGCCGGTATTGG-3ʹ;
Reverse5ʹ-CAGGTGAAATTGAAGG GCAGT-3ʹ;
Jagged1, forward 5ʹ-ACTGCTCACACCTGAAAGACCAC-3ʹ;
Reverse5ʹ-AGGACCACAGACGTTGGAGGAAA-3ʹ;
Notch1, forward 5ʹ-AGGACCTCATCAACTC ACACGC-3ʹ;
Reverse 5ʹ-TCTTTGTTAGCCCCGTTCTTCA G-3ʹ;
Hes1, forward 5ʹ-AGGCGGACATTCTGGAAA TG-3ʹ;
Reverse 5ʹ-CGGTACTTCCCCAGCACAC TT-3ʹ;
Hes5, forward 5ʹ-CTGGAGATGGCCGTCAG CTACCTG-3ʹ;
Reverse 5ʹ-GAGTAGCCCTCGCTGTAGTCCT G-3ʹ;
Hey1, forward 5ʹ-CTGCAGATGACCGTGGA TCA-3ʹ;
Reverse 5ʹ-CCAAACTCCGATAGTCCATAG CA-3ʹ;
GAPDH, forward 5ʹ-TCATGGGTGTGAAC CATGAGAA-3ʹ;
Reverse 5ʹ-GGCATGGACTGTGGTCATGA G-3ʹ.
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3

Oxycodone Modulates Apoptosis Regulatory Genes

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After treatment with different concentrations of oxycodone, the levels of Bcl-2, Bax, TLR4, p65, or GAPDH were measured by RT-qPCR. The isolation of RNA from hEndoSCs was carried out with the RNA-isolation kit (Life Technologies, USA) following the manufacturer's protocol. Then, the total RNA was reverse transcribed into cDNA in accordance with the instructions of PrimeScript RT Reagent Kit (TaKaRa, China), and qPCR analysis was conducted using the SYBR PrimeScript RT-PCR Kit (TaKaRa) with the ABI 7500 Real-Time PCR System (Agilent Technologies, USA). Target gene expressions were calculated using the 2−ΔΔCt method. Primer sequences for PCR were listed as follows:

  GAPDH: forward, 5′-TCAACGACCACTTTGTCAAGCTCA-3′; reverse, 5′-GCTGGTGGTCCAGGGGTCTTACT-3′;

  Bcl-2: forward, 5′-AGGATTGTGGCCTTCTTTGAG-3′; reverse, 5′-AGCCAGGAGAAATCAAACAGAG-3′;

  Bax: forward, 5′-TCTGAGCAGATCATGAAGACAGG-3′; reverse, 5′-ATCCTCTGCAGCTCCATGTTAC-3′;

  TLR4: forward, 5′-AGACCTGTCCCTGAACCCTAT-3′; reverse, 5′-CGATGGACTTCTAAACCAGCCA-3′;

  p65: forward, 5′-ATGTGGAGATCATTGAGCAGC-3′; reverse, 5′-CCTGGTCCTGTGTAGCCATT-3′.

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4

Quantifying circSETD3, miR-421, BCL2, and BAX

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After treatment, the levels of circSETD3, miR-421, BCL2, and BAX, were measured by qRT-PCR. RNA was isolated from HUCCT1, TFK1, QBC939 and HiBECs using the RNA-isolation kit (Life Technologies, USA) following the manufacturer’s protocol. Then, the total RNA was reverse transcribed to cDNA using PrimeScript RT Reagent Kit (TaKaRa Bio, Inc., China) following the manufacturer’s protocol, and qRT-PCR analysis was performed using the SYBR PrimeScript RT-PCR Kit (TaKaRa) with ABI 7500 Real-Time PCR System (Agilent Technologies, USA). The relative gene expressions were calculated using the 2−ΔΔCt method [17 (link)].
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5

Transcriptional Regulation of Cytoprotective Genes

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After treatment, the levels of Keap1, Nrf2, HO‐1, NQO1, and β‐actin were measured using RT‐qPCR. RNA was isolated from hEndoSCs using an RNA isolation kit (Life Technologies Corporation) as per the manufacturer's protocol. Next, the total RNA was reversed to cDNA according to the protocols of the cDNA Synthesis Kit (TaKaRa) and RT‐qPCR analysis was conducted using the SYBR Green Master mix (TaKaRa) and the ABI 7500 Real‐Time PCR System (Agilent Technologies). Gene expression was determined using the 2ΔΔCt method. Primer sequences for PCR were as follows:
Keap1 forward 5′‐ CCAATGCTGACACGAAGGAT‐3′;
Reverse 5′‐ATACAGTTGTGCAGGACGCAG‐3′.
Nrf2 forward 5′‐CAGCACATCCAGACAGACACCAG‐3′;
Reverse 5′‐GGCAAGCGACTCATGGTCATCTAC‐3′.
HO‐1 forward 5′‐AGCGAAACAAGCAGAACCCAGTC‐3′;
Reverse 5′‐GCTGTGTGGCTGGTGTGTAAGG‐3′.
NQO1 forward 5′‐GAAGAGCACTGATCGTACTGGC‐3′;
Reverse 5′‐GGATACTGAAAGTTCGCAGGG‐3′.
β‐actin forward 5′‐TCACCCACACTGTGCCCATCTACGA‐3′;
Reverse 5′‐CAGCGGAACCGCTCATTGCCAATGG‐3′.
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6

Profiling Circulating Biomarkers in Cervical Cancer

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After treatment, the levels of circRNA THBS1, miR-543, HMGB2, E-cadherin, and N-cadherin were measured by RT-qPCR. The isolation of RNA from cervical cancer tissue and cervical cancer cell lines (C-33A, SiHa, CaSki, and HeLa) was obtained with the TRIpure Total RNA Extraction Reagent (ELK Biotechnology) based on the protocol. Then, the total RNA was reversed to cDNA following the instructions of PrimeScript RT Reagent Kit (TaKaRa, China), and qPCR analysis was conducted using the SYBR PrimeScript RT-PCR Kit (TaKaRa) with ABI 7500 Real-Time PCR System (Agilent Technologies, USA). Target gene expressions were calculated using the 2−ΔΔCt method.
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7

Quantitative RT-PCR Analysis of Gene Expression

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Total RNA was extracted from cells with TRIzol reagent (Invitrogen) following the manufacturer’s instructions. Then the total RNA was reversed into cDNA in accordance with the instructions of PrimeScript RT Reagent Kit (Beyotime, China), and quantitative real-time polymerase chain reaction (qRT-PCR) analysis was conducted using the SYBR PrimeScript RT-PCR Kit (TaKaRa) with ABI 7500 Real-Time PCR System (Agilent Technologies, USA). Primer sequences for PCR were listed as following:
GAPDH was used as the internal control. The target gene relative levels were analyzed by the 2−ΔΔCq method [24 (link)].
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8

Quantifying Gene Expression in KGN Cells

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TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.) was used to extract total RNA from KGN cells following the manufacturer's protocol. Subsequently, cDNA was synthesized from the total RNA using a cDNA Synthesis kit (Takara Bio, Inc.). RT conditions were as follows: 25˚C for 5 min, 42˚C for 60 min and 80˚C for 2 min. RT-qPCR was conducted using an ABI 7500 Real-Time PCR System (Agilent Technologies, Inc.) with SYBR Green Master mix (Takara Bio, Inc.). The samples were initially incubated at 95˚C for 10 min to denature the cDNA strand and 37 cycles were performed including denaturation at 95˚C for 30 sec, annealing at 60˚C for 60 sec and extension at 72˚C for 15 sec. A final extension was conducted at 72˚C for 10 min. GAPDH was used as the internal reference for mRNA and U6 for miRNA. Primer sequences for PCR were as follows: GAPDH forward, 5'-TTTGGTATCGTGGAAGGACTC-3' and reverse, 5'-GTAGAGGCAGGGATGATGTTCT-3'; U6 forward, 5'-GCTTCGGCAGCACATATACTAAAAT-3' and reverse, 5'-CGCTTCACGAATTTGCGTGTCAT-3'; Wnt3a forward, 5'-GTTCGGGAGGTTTGGG-3' and reverse, 5'-CCAGGAAAGCGGACCAT-3'; β-catenin forward, 5'-GTTGTACTGCTGGGACCCTT-3' and reverse, 5'-CCCAAGCATTTTCACCAGCG-3'; and miR-451a forward, 5'-ACACTCCAGCTGGGAAACCGTTACCATTACT-3' and reverse, 5'-CTGGTGTCGTGGAGTCGGCAA-3'. The gene expression levels were calculated using the 2-ΔΔCq method (28 (link)).
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