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Infinite 200 pro reader

Manufactured by Tecan
Sourced in Switzerland, Germany, United States

The Infinite 200 PRO reader is a versatile microplate reader designed for a wide range of absorbance, fluorescence, and luminescence measurements. The instrument features a high-performance monochromator-based optical system, advanced detection capabilities, and user-friendly software for efficient data acquisition and analysis.

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89 protocols using infinite 200 pro reader

1

Microbial metal tolerance assay

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A preculture was incubated at 30°C, 200 rpm up to early stationary phase, then diluted 1:20 into fresh medium and incubated for 24 h at 30°C and 200 rpm. Overnight cultures were used to inoculate parallel cultures with increasing metal concentrations in 96-well plates (Greiner). Cells were cultivated for 20 h at 30°C and 1,300 rpm in a neoLab Shaker DTS-2 (neoLab, Heidelberg, Germany) and the optical density was determined at 600 nm as indicated in a TECAN Infinite 200 PRO reader (Tecan Group Ltd., Männedorf, Switzerland). To calculate the IC50 values (inhibitory concentration: metal concentration that led to turbidity reduction by half) and the corresponding b value (measure of the slope of the sigmoidal dose-response curve), the data were adapted to the formula OD(c) = OD0/{1 + exp([c − IC50]/b)}, which is a simplified version of a Hill-type equation, as introduced by Pace and Scholtz (1997) (113 , 114 (link)). OD(c) is the turbidity at a given metal concentration, OD0 that had no added metal and c, the metal concentration.
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2

RNA-seq Library Preparation and Sequencing

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RNA was extracted with the QIAsymphony® system using a QIAsymphony® RNA Kit (Qiagen). Library generation with 250 ng input RNA was performed using the TruSeq Stranded mRNA Library Prep Kit (Illumina, Inc.) according to the manufacturer's recommendations. Qualification of RNA and sequencing libraries was performed using an Advanced Analytical Fragment Analyzer™ (Advanced Analytical Technologies, Inc, Heidelberg, Germany) with High Sensitivity RNA Analysis DNF‐472 (15 nt) and Standard Sensitivity NGS Fragment Analysis DNF‐473 Kits. Quantification of sequencing libraries was carried out on a Tecan Infinite® 200 Pro Reader (Tecan Group) using the Quant‐iT™ PicoGreen® dsDNA Kit (Invitrogen). Libraries were pooled and sequenced on a HiSeq. 3000 instrument (Illumina, Inc.) in single‐end mode and 85 cycles.
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3

Microbial Metal Tolerance Assay

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Experiments were conducted in TMM. A pre-culture was incubated at 30°C, 200 rpm up to early stationary phase, then diluted 1:20 into fresh medium, and incubated for 24 h at 30°C and 200 rpm. Overnight cultures were used to inoculate parallel cultures with increasing metal concentrations in 96-well plates (Greiner). Cells were cultivated for 20 h at 30°C and 1,300 rpm in a neoLab Shaker DTS-2 (neoLab, Heidelberg, Germany), and the optical density was determined at 600 nm in a TECAN infinite 200 PRO reader (Tecan Group Ltd., Männedorf, Switzerland) as indicated. To calculate the IC50 values (inhibitory concentration: metal concentration that led to turbidity reduction by half) and the corresponding b-value (measure of the slope of the sigmoidal dose-response curve), the data were adapted to the formula OD(c) = OD0/{1 + exp[(c - IC50)/b]}, which is a simplified version of a Hill-type equation as introduced by Pace and Scholtz (69 ) as published (70 (link)). OD(c) is the turbidity at a given metal concentration, OD0 that had no added metal, and c the metal concentration.
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4

Fluorescent staining of IDG fractions

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Ninety-nine microlitres of IDG fractions was incubated with 1 µL of SYTO® RNASelect™ Green Fluorescent RNA specific stain (ThermoFisher) or lipophilic carbocyanine DiOC18 (DiR, ThermoFisher), diluted in 0.22 µm filtered PBS (respectively, at 500 nM and 1 µM final concentration), at 37°C for 30 min protected from light on a black Greiner CELLSTAR® chimney well plate. After incubation, 100 µL of 0.22-µm filtered PBS buffer was added to each well. Readings were then taken at the DiR and SYTO specific emission wavelength (respectively 780 and 525 nm) using the Infinite® 200 PRO reader (Tecan Trading AG).
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5

MTT Assay for Cell Viability

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Cell viability was assessed by using 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT, Sigma-Aldrich, Inc.). MTT was solubilized in culture media without FCS at the final concentration of 0.5 mg/mL. Cells were incubated with MTT for 50 min at +37°C in the dark. The purple formazan crystals produced by viable cells were dissolved by DMSO and the absorbance was quantified at 550 nm with an Infinite® 200 Pro reader (Tecan Trading AG).
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6

Bioluminescence Assay for Bacterial Growth

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Precultures were grown over night in 10 ml LB medium inoculated from a single colony. From a preculture 10 ml of LB medium was inoculated with an OD600 = 0.1 in triplicates and cultivated at 30 °C. At defined time points, OD600 was measured and 100 µl of each culture were transferred into the well of a microtiter plate (corning 96 flat bottom white, clear bottom polystyrol, -pure Grade™ S-, Ref: 781,670, BRANDplates®). Bioluminescence was measured with an Infinite 200 PRO reader (Tecan Trading AG, Männedorf. Switzerland) (Shaking linear duration: 4 s, shaking linear amplitude: 1 mm, top reading, mode: luminescence, attenuation: none, integration time: 1,000 ms, settle time: 0 ms). For comparability, bioluminescence was normalized by division through the OD600 measured at the same time point. GraphPad Prism 7.00 (GraphPad Software, Inc, La Jolla, CA, USA) was used for calculating P values (unpaired t-test).
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7

Microtiter Plate Biofilm Assay

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The ability to form biofilms on a plastic surface was monitored using a slightly modified version of the microtiter plate biofilm assay published by Merritt, Kadouri & O’Toole (2005) (link). Cells of an overnight culture grown in LB medium were collected with centrifugation (2 min, 10,000× g, RT) and resuspended in Schneider’s insect medium adjusting to an OD600 = 0.6. For every strain, 100 µl was inoculated in six replicate wells (Polystyrene (PS) Microtest Plate 96 Well.R, round bottom, Ref 82.1582.001; Sarstedt, Nümbrecht, Germany) and incubated for 72 h at 30 °C in a humidified box. We cultivated the strains in Schneider’s insect medium, when performing the biofilm assay. The wells were washed twice with H2O and biofilms were stained with 0.1% crystal violet solution (solved in H2O) for 10 min. Unbound dye was removed and the stained biofilms were air dried. The amount of biofilm bound crystal violet serves as a measure for biofilm formation. Dye was dissolved using 30% acetic acid, with 100 µl of this solution transferred to a new microtiter plate (Polystyrene (PS) Microtest Plate 96 Well.F, flat bottom, Ref 82.1581.001; Sarstedt, Nümbrecht, Germany) for measuring the absorption at a wavelength of 570 nm using a microplate reader (Infinite 200 PRO reader; Tecan Trading AG, Männedorf. Switzerland).
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8

MTT Assay for Cell Viability

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Cell viability was performed by MTT assay as previously described (Lefebvre et al., 2020). Cells were seeded in 6-well plates in double of density as invasion assays at the rate of 8 × 104 cells per well. After 24 h of incubation, the medium is replaced by 800 µl of MTT (tetrazolium salts of 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide, Sigma-Aldrich, Darmstadt Germany) solubilized in culture medium without FBS at 0.5 mg/ml in each well. Plates were then incubated for 50 min at 37°C in obscurity. To dissolve purple formazan crystals formed by living cells, the culture medium was replaced with DMSO (dimethyl sulfoxide, Sigma-Aldrich, Darmstadt Germany). Absorbance of each well was quantified at 550 nm using an Infinite® 200 Pro Reader (Tecan Trading AG, Männedorf, Switzerland).
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9

MTT Cell Proliferation Assay

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Cell proliferation was tested by MTT assay. Cells were seeded in 6-well plates in the same density as migration and invasion assays to prove that the variations observed are not due to a seeding difference. Then, the yellow tetrazolium salts of 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT, Sigma-Aldrich, Inc.) solubilized in culture medium without FCS (0.5 mg/mL) was added to each well and incubated 50 min at + 37 °C in the dark. To dissolve purple formazan crystals, the culture medium was replaced with dimethyl sulfoxide (DMSO, Sigma-Aldrich, Inc.). Absorbance of each well was quantified at 550 nm using an Infinite® 200 Pro reader (Tecan Trading AG).
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10

Serum Protein Quantification Protocol

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Patients´ sera were obtained during surgery and immediately stored at −80 °C. Likewise, healthy serum samples were immediately stored at −80 °C after removal. Total protein concentration was measured using Pierce® BCA Protein Assay Kit (Thermo Fisher Scientific Inc, Rockford, IL, USA) and Infinite 200® PRO Reader (Tecan Group Ltd., Männedorf, Switzerland) according to the manufacturer’s protocol. Magellan™ Data Analysis Software (Tecan Group Ltd., Männedorf, Switzerland) was taken for analysis of these data. All serum samples were diluted to a concentration of 0.1 μg/μl of total protein.
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