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27 protocols using c3867

1

Mycotoxin Effects on MAC-T Cell Barrier

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An insert-based MAC-T cell culture system was established as previously described with slight modifications [50 (link)] to assess the paracellular permeability of MAC-T cell monolayer. MAC-T cells were seeded at 2.5 × 104 cells per Transwell® insert (Corning® Transwell® #3470, 6.5 mm, 0.4 µm pore size) pre-coated with Type I collagen at 10 μg/cm2 (C3867, Sigma-Aldrich) according to the manufacturer’s instruction and grown for 33 days in the same medium described above to ensure stable transepithelial electrical resistance (TEER) readings were yield according to our preliminary studies (data not shown). Medium was refreshed for both apical (AP) and basal compartments (BL) of the Transwell® inserts every other day [82 (link)]. On day 33, the cells were exposed to the increasing non-cytotoxic concentrations of either OTA (0, 2, 4.8 and 9.6 μmol/L), or CIT (0, 30, 60 and 80 μmol/L) in the AP compartment for 48 h. The TEER readings were measured before the addition of mycotoxins (TEER0) and after 48 h mycotoxin exposure (TEER48) using a Millicell ERS-2 Voltohmmeter (EMD Millipore Corporation) according to the manufacturer’s instruction. The change in TEER was expressed as TEER48 to TEER0 ratio, which was calculated according to the following formula [112 (link)]:
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2

3D Multicellular Spheroid Formation

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Before the cells were loaded, a 1 ml type I collagen solution (~4.26 mg/ml; C3867, SIGMA) was prepared by adding cell culture medium and 1 N sodium hydroxide for pH adjustment (details are reported in the Supplementary Table S1). Before each individual experiment, the pH of the collagen solution was measured to be around pH 7.4. The cells were then resuspended in solutions with different concentrations of collagen (0, 50, 500, and 1000 μg/ml). In 3D multicellular spheroid culture Fig. 1(c), cellular drops with a volume of 1 μl were dispensed onto the PDMS-HDA device (step 1) by a liquid handing machine (Versa 10 spotter, Aurora Instruments Ltd.) Fig. 1(b). Each drop had an average diameter of 1.4 mm. The device was flipped and placed in a 6-cm cell culture dish, which had been pre-filled with medium of 750 μl and sealed with parafilm to prevent evaporation of the cell-containing drops. The whole set was transferred immediately to a humidified incubator at 37 °C overnight to allow the formation of collagen fibrils, which contributed to the sedimentation and aggregation of the cells (Steps 2 and 3), promoting the generation of cellular spheroids (Step 4).
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3

Assessing Hepatocyte Mitochondrial Function

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Hepatocytes were plated in a collagen-coated (Sigma-Aldrich C3867) seahorse XF96 cell culture microplates at 5000 cells/well in 80 µL in Buffer C and incubated at 37 °C for 6 h. After 6 h media was changed, and hepatocytes were cultured overnight before any experimental procedure. Mitochondrial measurements and FAO were performed using the Seahorse XF Cell Mito Stress Test (Agilent 103015-100) according to manufacturer’s instructions. Briefly, primary hepatocytes were plated as indicated above and the following morning regular media was replaced for Seahorse XF DMEM medium (Agilent 103575-100) supplemented with 10 mM glucose (Agilent 103577-100), 1 mM Sodium pyruvate (Agilent 103578-100) and 2 mM glutamine (Agilent 103579-100). Oxygen consumption Rate (OCR) was measured following the sequential addition of 40 µM of Etomoxir (MedChemTronica HY-502002; port A), 1.5 µM of oligomycin (port B), 0.3 µM of carbonyl cyanide 4-(trifluoromethoxy)-phenylhydrazone (FCCP)(port C) and 0.5 µM of Antimycin/Rotenone (Rot/AA) (port C). The oligomycin, FCCP and the Rot/AA were purchase from Agilent (103015-100). Oxygen consumption rate (OCR) was normalized to protein concentration using BCA Protein Assay (Thermo Scientific™ 23222). All parameters were represented as normalize OCR.
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4

Sterilization and Swelling of Hydrogels

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Following polymerization,
hydrogels were sterilized with 20 min of UV exposure under sterile
laminar flow hood conditions. Afterward, hydrogels were swelled at
room temperature for 2 h in either PBS or a collagen solution diluted
with PBS to a final concentration of 25 mg/mL (C3867, Sigma-Aldrich
Inc.). To remove acidic byproducts formed during hydrogel polymerization,
gels were washed three times with Dulbecco’s modified Eagle
medium (DMEM) (D6421, Sigma-Aldrich Inc.) or DMEM containing 25 mg/mL
collagen, for PBS or collagen swelled conditions, respectively.
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5

Transendothelial Resistance Measurement

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EC were grown on Transwell polycarbonate filters (pore size, 0.4 µm; Sigma-Aldrich, CLS3396) first coated with calfskin collagen type I (Sigma-Aldrich, C3867) and bovine plasma fibronectin (Sigma-Aldrich, F1141). Transendothelial resistance across the monolayer was determined by using an Endohmeter (World Precision Instruments, Sarasota, FL) stabilized at 148 ± 12 Ω. Resistance from coated cell-free inserts was always subtracted from the resistance obtained in the presence of endothelial cells.
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6

Peptide self-assembly on mica surface

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Round mica with a diameter of 12 mm (Grade V1, 0.21 mm thickness from Ted Pella Inc., Redding, CA, USA) was used as the substrate surface. A total of 50 μM peptide (solute) in type 1 rat tail collagen suspension (solvent, 3 mg/mL, C3867 from Sigma-Aldrich, St. Louis, MO, USA) was prepared by gently dissolving and mixing lyophilized peptide into the collagen suspension. A total of 150 μL of the peptide-suspension was drop-casted on the mica, left to self-assemble at 4 °C, and further examined after it was dry (approximately 16 h).
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7

Optimizing Endothelial Cell Monolayer in Tubular Scaffolds

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To obtain a uniform endothelial cell monolayer within the scaffolds, it is important to determine the substrate coating type and concentration that will lead to optimal cell coverage. The tubular scaffolds were prepared as described and their lumen coated with different concentrations of collagen type 1 (5–10 µg/mL, C3867, Sigma-Aldrich) and/or fibronectin (10–40 µg/mL, F0895, Sigma-Aldrich) in 1× Phosphate buffer solution (PBS). The solutions were pipetted in the lumen of the scaffolds and filters were inserted with tubing at both extremities (Fig. 3a). Alternatively, a plug system can be used to enhance sterility while samples are manipulated. Substrate coating was performed overnight at 37 °C while the scaffolds were attached on a rotor (8 rpm) (Labquake Rotor, Series 1104, Barnstead/Thermolyne) (Fig. 3b). Coating solutions were pipetted out of the scaffolds and the scaffolds were washed once by pipetting 1× PBS in and out of the lumen before cell seeding. This ensured the removal of unbound substrate that could prevent cells to adhere to the surface.

Cell culture considerations. a Experimental set-up. Tubing = filter or tubing plug. b Arrangement for even coverage. c Overall cell culture process. d Efficient trypsinization of cells is assessed using microscopy

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8

Evaluating Tumor Spheroid Invasion

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5 × 103 parental or FAR MCF7 or T47D cells transfected with siRNA CTRL or against PAK1, were seeded in octoplicate in Ultra-Low attachment 96 plate in 100 µL of 10% DMEM-FBS for 4 days. Tumor spheroids from 4 wells were collected, centrifuged at 1200 rpm for 5 min and resuspended in 100 µL FBS for each collagen matrix. Spheroids were embedded in a neutralized collagen I solution at 2 mg/mL final concentration (#C3867, Sigma-Aldrich) and seeded in 24 well plate. Samples were treated with the indicated drugs for 6 days, every 72 h, as detailed in the specific figure legends. Spheroids growth and invasion was monitored at the inverted microscope, the whole and invading spheroids area were quantified with ImageJ 1.53 software (NIH, Bethesda, MD, USA). The invading spheroids area was calculated by subtracting the area of spheroidal nucleus from the total spheroidal surface, normalizing to time 0 area.
For 2D invasion assays, 7 × 104 cells were seeded into the top chamber of transwell (pore size, 8 mm; Corning) pre-coated with Matrigel (Corning) in DMEM: Matrigel ratio 1:1. After 6 days, invading cells were stained in 0.1% crystal violet for 30 min. Invading cells were counted and plotted as mean of cell count per field.
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9

Hepatocyte Amino Acid Stimulation

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Primary hepatocytes were cultured at a confluence of 300000 cells per well in collagen-coated (Sigma-Aldrich #C3867) multi six-well plates. After 6 hours the media was changed, and hepatocytes were cultured overnight before any experimental procedure. The next day, cells were rinsed three times and placed in DMEM:F12 without amino acids (USBiological Life Science #D9807-10) supplemented with 6mM NaHCO3 (Sigma #1063291000), 18mM HEPES pH 7.4 (Lonza #17-737E), 25 mM glucose (Sigma-Aldrich #G8769) and 10% dialyzed FBS during 1 hour. Re-stimulation with amino acids was performed for the indicated times.
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10

Collagen and Amino Content Quantification

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The Total Collagen Content (TCC) was determined using Sirius Red. A TCC calibration curve was made using standard samples of collagen type I from rat tail (C3867, Sigma-Aldrich) in 0.02 N CH3COOH. The Total Amino Content (TAC) was determined spectrophotometrically using the Ninhydrin assay. The TAC calibration curve was established using standard samples of cysteamine (Cysteamine ≥ 98.0% (RT), 30070, Sigma-Aldrich) prepared in PBS 1X and buffered to pH 7.4 (i.e. the same as the ECM pre-gel solution) to avoid any pH related bias. For both assays, a pepsin solution with no liver dECM powder was prepared (as described in ‘Liver ECM gels’) and used as a blank for absorbance readings of liver ECM pre-gel solution samples.
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