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Fmoc protected amino acids

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Fmoc-protected amino acids are chemical compounds used in the synthesis of peptides and proteins. They serve as building blocks in the solid-phase peptide synthesis process. Fmoc-protected amino acids provide a protective group that allows for the controlled addition of individual amino acids during peptide assembly.

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6 protocols using fmoc protected amino acids

1

Fmoc-Amino Acid Synthesis and Cell Culture

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Fmoc-protected amino acids were obtained from AAPPTEC (Louisville, KY) and EMD Biosciences (San Diego, CA). The resin was purchased from Chem-Implex (Wood Dale, IL). All cell lines studied were purchased from American Type Culture Collection (ATCC, Manassas, VA). Cell Titer-Glo® reagent was purchased from Promega (Madison, WI). NMR solvents were obtained from Cambridge Isotope laboratories, Inc., Tewksbury, MA.
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2

Optimizing Peptide Synthesis and Cell Culture Techniques

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Fmoc-protected amino acids were purchased from AAPPTEC (Louisville, KY) and EMD Biosciences (San Diego, CA). Resins were obtained from Chem-Implex (Wood Dale, IL), N-methyl-2-pyrrolidinone (NMP) from Advanced ChemTech (Louisville, KY), and 4-methylmorpholine (NMM) from Sigma-Aldrich (St. Louis, MO); all were used without further purification. Acetic anhydride (Ac2O) was purchased from Fisher Scientific (Pittsburgh, PA). All the cancer cell lines and media were obtained from American Type Culture Collection (ATCC, Manassas, VA). PathHunter assay kit was from DiscoverX technologies (Fremont, CA). For Western blot experiment, Novex® 4–20% tris-glycine gels and cell lysis buffer were ordered from Life Technologies (Grand Island, NY) and antibodies from Abcam, Inc. (Cambridge, MA). The antibodies for the housekeeping protein glyceraldehyde 3-phosphate dehydrogenase (GAPDH) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX).
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3

Peptide Synthesis and Plasmid Purification

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Unsubstituted Wang resin and diisopropylcarbodiimide (DIC) were from Advanced ChemTech (Louisville, KY, USA). Fmoc-protected amino acids, N-hydroxybenzotriazole (HOBt), O-(benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HBTU), and N, N-dimethylformamide (DMF) were from AAPPTec (Louisville, KY, USA). Trifluoroacetic acid (TFA) and acetonitrile were obtained from Fisher Scientific (Pittsburgh, PA, USA). Diisoproplyethylamine, piperidine and acetic anhydride were purchased from Sigma Chemical Co. (St Louis, MO, USA). Maleimide-mPEG30kDa was obtained from Laysan Bio (Arab, AL, USA). D-Luciferin and luciferase from Photinus pyralis were obtained from Roche Applied Science (Indianapolis, IN, USA). pGL3 control vector, a 5.3-kbp luciferase plasmid containing a SV40 promoter and enhancer, was obtained from Promega (Madison, WI, USA). pGL3 was amplified in a DH5α strain of Escherichia coli and purified using a Qiagen giga prep according to the manufacturer’s instructions.
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4

Solid Phase Peptide Synthesis Using Rink Amide Resin

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The Rink Amide ChemMatrix resin, used in solid phase peptide synthesis, was commercially obtained from Pcas-Biomatrix Inc. (Quebec, QC, Canada). Fmoc-protected amino acids and O-benzotriazole-N,N,N′,N′-tetramethyluraniumhexafluorophosphate (HBTU) were purchased from AAPPTec (Louisville, KY, USA), ChemPep, Inc. (Wellington, FL, USA), and Chem-Impex International (Wood Dale, IL, USA). Piperidine and diisopropylethylamine (DIEA) were procured from Alfa Aesar (Ward Hill, MA, USA). Acetonitrile, triisopropylsilane (TIPS), trifluoroacetic acid (TFA), and cobalt (II) chloride hexahydrate were all obtained from Sigma Aldrich (St. Louis, MO, USA). N,N-dimethylformamide (DMF), dichloromethane (DCM), and methanol (MeOH) were purchased from AVANTOR (Center Valley, PA, USA) and Fisher Scientific (Pittsburgh, PA, USA). Ethylenediaminetetraacetic acid disodium salt (EDTA) was purchased from Mallinckrodt JT Baker (Hazelwood, MO, USA). Scanning electron microscopy (SEM) stubs, round glass coverslips, and transmission electron microscopy (TEM) grids were obtained from Ted Pella, Inc. (Redding, CA, USA).
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5

Synthesis and Conjugation of Novokinin Peptide

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Novokinin was synthesized using a standard Fmoc-mediated solid-phase peptide synthesis (SPPS) using the Aapptec Focus Xi peptide synthesizer (Louisville, KY, USA). All Wang resin, Fmoc-protected amino acids, solvents, and reagents needed for peptide synthesis were purchased from Aapptec (Louisville, KY, USA). The chain elongation was performed by removing the Fmoc group from the resin-attached amino acid. Next, Fmoc-protected amino acid (based on the sequence) was added until the entire peptide was synthesized. After the completion of synthesis, the final Fmoc group was removed and cleaved from the resin. After purification of the novokinin, it was coupled with Maleimidopropionyl-PEG NHS Ester (Polypure, Oslo, Norway) in an equimolar concentration for an hour to form an intermediate compound. A 10× solution of thiol-BP (Surfactis Technologies, Angers, France) was reacted with the intermediate compound for another hour. After completion of coupling, the conjugate was dialyzed to separate it from unreacted reagents.
The resultant peptide and conjugate were characterized by Agilent 6545 LC/Q-TOF. A US patent application for this innovative Novo Conj synthesis and pharmacological effect was filed. For the animal study, a batch of Novo Conj was synthesized by AnaSpec (CA, USA) and used after structural and purity confirmation.
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6

Synthesis of HPMA Copolymer

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N-(2-hydroxypropyl)methacrylamide (HPMA) was purchased from Polysciences (Warrington, PA). The initiator VA-044 was purchased from Wako Chemicals (Richmond, VA). Fmoc-protected amino acids and HBTU were purchased from AAPPTec (Louisville, KY), N-succinimidyl methacrylate from TCI America (Portland, Oregon), and Rink Amide Resin from EMD Biosciences (Darmstad, Germany). All other materials were reagent grade or better and were purchased from Sigma-Aldrich (St. Louis, MO) unless otherwise stated.
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