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Itaq fast sybr green supermix with rox

Manufactured by Bio-Rad
Sourced in United States

ITaq Fast SYBR Green Supermix with ROX is a ready-to-use real-time PCR reaction mix designed for fast and reliable gene expression analysis. It contains all the necessary components for real-time PCR, including a DNA polymerase, SYBR Green I dye, and ROX passive reference dye.

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15 protocols using itaq fast sybr green supermix with rox

1

Quantitative PCR for Gene Expression

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RNA was converted to cDNA using the iScript cDNA synthesis kit (BioRad, CA, USA). Quantitative polymerase chain reaction was performed using a 7500 Fast Real-time polymerase chain reaction system (Applied Biosystem). Ddah1 (5′-CACAGAAGGCCCTCAAGATCA-3′, 5′-TCTCATAGACCTTTGCGCTTTC-3′), Ddah2 (5′-CCTGGTGCCACACCTTTCC-3′, 5′-AGGGTGACATCAGAGAGCTTCTG-3′) and Agxt2 (5′-GGCTTCCCCATGGCTGCAGTT-3′, 5′-CAATCACCTCAAGCACAGCAGATCC-3′). mRNA levels were determined busing the iTAQ fast SybrGreen supermix with ROX (BioRad, CA, USA) expression assays and normalized to levels of Actb (5′-CCAGGGTGTGATGGTGGGAATG-3′, 5′-CGCACGATTTCCCTCTCAGCTG-3′). For Ptgs2 (probe ID: Mm00478374_m1), Prmt1 (probe ID: Mm00480133_m1), Arg1 (probe ID: Mm00475988_m1), Arg2 (probe ID: Mm00477592_m1), 18S rRNA (probe ID: Mm03928990_g1), and Gapdh (probe ID: Mm99999915_g1) gene expression levels were determined using TaqMan expression assays. Genes were quantified relative to housekeeping genes (Actb or Gapdh/18S) by comparative Ct methods.
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2

Quantitative Analysis of Androgen Receptor Signaling

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Cells were starved with phenol red-free and serum free-medium for at least 48 h before treatment with the indicated drugs and/or androgens. RNA extraction and cDNA synthesis were performed with the GenElute Mammalian Total RNA miniprep kit (Sigma-Aldrich) and iScript cDNA Synthesis Kit (Bio-Rad, Hercules, CA) respectively. Quantitative PCR (qPCR) analysis was conducted in triplicate in an ABI 7500 Real-Time PCR machine (Applied Biosystems) using iTaq Fast SYBR Green Supermix with ROX (Bio-Rad) and primers for TMPRSS2, PSA and RPLPO, as described previously 4 (link). SYBR Premix Ex Taq II (Takara) was used for SRD5A1, SRD5A2 and AR v7 detection. Primers used for AR detection are 5′-TCTTGTCGTCTTCGGAAATGT-3′ and 5′-AAGCCTCTCCTTCCTCCTGTA-3′ 25 (link). Primers used for AR v7 detection are 5′-CCATCTTGTCGTCTTCGGAAATGTTATGAAGC-3′ and 5′-TTTGAATGAGGCAAGTCAGCCTTTCT-3′26 (link). Accurate quantitation of each mRNA was achieved by normalizing the sample values to RPLPO and to vehicle-treated cells. 50 μg cell lysate was used for immunoblot with rabbit anti-SRD5A1 (Abnova) and mouse anti–β-actin (Sigma-Aldrich) antibodies.
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3

Quantitative Analysis of Androgen Receptor Signaling

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Cells were starved with phenol red-free and serum free-medium for at least 48 h before treatment with the indicated drugs and/or androgens. RNA extraction and cDNA synthesis were performed with the GenElute Mammalian Total RNA miniprep kit (Sigma-Aldrich) and iScript cDNA Synthesis Kit (Bio-Rad, Hercules, CA) respectively. Quantitative PCR (qPCR) analysis was conducted in triplicate in an ABI 7500 Real-Time PCR machine (Applied Biosystems) using iTaq Fast SYBR Green Supermix with ROX (Bio-Rad) and primers for TMPRSS2, PSA and RPLPO, as described previously 4 (link). SYBR Premix Ex Taq II (Takara) was used for SRD5A1, SRD5A2 and AR v7 detection. Primers used for AR detection are 5′-TCTTGTCGTCTTCGGAAATGT-3′ and 5′-AAGCCTCTCCTTCCTCCTGTA-3′ 25 (link). Primers used for AR v7 detection are 5′-CCATCTTGTCGTCTTCGGAAATGTTATGAAGC-3′ and 5′-TTTGAATGAGGCAAGTCAGCCTTTCT-3′26 (link). Accurate quantitation of each mRNA was achieved by normalizing the sample values to RPLPO and to vehicle-treated cells. 50 μg cell lysate was used for immunoblot with rabbit anti-SRD5A1 (Abnova) and mouse anti–β-actin (Sigma-Aldrich) antibodies.
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4

Quantitative PCR Analysis of Prostate Cancer Markers

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Cells were starved with phenol red-free and serum free-medium for at least 48 h and treated with the indicated drugs and/or androgens. RNA was extracted with a GenElute Mammalian Total RNA miniprep kit (Sigma-Aldrich). cDNA was synthesized from 1 μg RNA in a reverse transcription reaction using the iScript cDNA Synthesis Kit (Bio-Rad, Hercules, CA). Quantitative PCR (qPCR) analysis was conducted in triplicate with primers for PSA, TMPRSS2, FKBP5, and RPLPO described previously3 (link), with an ABI 7500 Real-Time PCR machine (Applied Biosystems) using iTaq Fast SYBR Green Supermix with ROX (Bio-Rad) in 96-well plates at a final reaction volume of 20 μL. Accurate quantitation of each mRNA was achieved by normalizing the sample values to RPLPO and to vehicle-treated cells.
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5

Quantitative RT-PCR Analysis of Gene Expression

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Total RNA was extracted with a GenElute Mammalian Total RNA miniprep kit (Sigma-Aldrich) and 1μg RNA was reverse-transcribed to cDNA with the iScript cDNA Synthesis Kit (Bio-Rad). An ABI 7500 Real-Time PCR instrument (Applied Biosystems) was used to perform the qPCR analysis, using iTaq Fast SYBR Green Supermix with ROX (Bio-Rad) in 96-well plates at a final reaction volume of 10 μl. The qPCR analysis was carried out in triplicate with the following primer sets:
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6

Quantitative Real-Time PCR Analysis

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Total RNA was extracted with GenElute Mammalian Total RNA miniprep kit (Sigma-Aldrich), and 1 μg RNA was reverse-transcribed to cDNA with the iScript cDNA Synthesis Kit (Bio-Rad). An ABI 7500 real-time PCR instrument (Applied Biosystems) was used to perform quantitative PCR (qPCR) analysis, using iTaq Fast SYBR Green Supermix with ROX (Bio-Rad) in 96-well plates at a final reaction volume of 10 μL. The qPCR analysis was carried out in triplicate with the following primer sets: HSD3B1, 5′-CCATGTGGTTTGCTGTTACCAA-3′ (forward), 5′-TCAAAACGACCCTCAAGTTAAAAGA-3′ (reverse); PSA, 5′-GCATGGGATGGGGATGAAGTAAG-3′ (forward), 5′-CATCAAATCTGAGGGTTGTCTGGA-3′ (reverse); FKBP5, 5′-CCCCCTGGTGAACCATAATACA-3′ (forward), 5′-AAAAGGCCACCTAGCTTTTTGC-3′ (reverse); TMPRSS2, 5′-CCATTTGCAGGATCTGTCTG-3′ (forward), 5′-GGATGTGTCTTGGGGAGCAA-3′ (reverse); RPLP0 (large ribosomal protein P0, a housekeeping gene), 5′-CGAGGGCACCTGGAAAAC-3′ (forward, 5′-CACATTCCCCCGGATATGA-3′ (reverse).
For steroid-treated cells, each mRNA transcript was quantitated by normalizing the sample values to RPLP0 and to vehicle-treated cells. All gene expression studies were repeated in at least 3 independent experiments.
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7

Quantification of AAV Titer by qPCR

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The AAV titer was determined by quantitative PCR (qPCR) using the iTaq Fast SYBR Green supermix with ROX (Bio-Rad, Hercules, CA) in an ABI 7900 HT qPCR machine (Applied Biosystems, Foster City, CA, USA). A set of primers were designed to amplify a fragment in the CK8 promoter. The forward primer is 5′-AGCCCCTCCTGGCTAGTCAC-3′, and the reverse primer is 5′-CCTGAGTGTCTGTCTGTGCTGTG-3′. The qPCR reaction was carried out under the following conditions: 20 s at 95°C, followed by 40 cycles: 15 s at 95°C and 60 s at 60°C. A dissociation curve step was applied at the end of the reaction to confirm the primer efficiency using the following conditions: 15 s at 95°C, 15 s at 60°C, and 15 s at 95°C. The threshold cycle (Ct) value of each reaction was converted to the vector genome copy number by measuring against plasmid standard series representing 1 × 106 to 1 × 1011 vg/μL at a log10 increments.
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8

Quantification of Ezrin Gene Expression

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RNA was extracted from A549 cells using the RNeasy Mini Kit (Qiagen, Valencia, CA, USA). An iScript reverse transcription supermix kit (Bio-Rad, Hercules, CA, USA) was used for reverse transcription. PCR amplification mixtures were prepared using iTaq™ Fast SYBR Green Supermix with ROX (Bio-Rad, Hercules, CA, USA). The sequences of the primers for ezrin were as follows: forward 5′-GTG GGA TGC TCA AAG ATA ATG C-3; reverse 5′-CAC CTC GAT GGT GTC AGG CT-3′. Real-time PCR was performed using an Mx3000p system (Stratagene, La Jolla, CA, USA) and all samples were run in triplicate. The quantification of gene expression levels was calculated relative to β-actin.
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9

Quantitative PCR Analysis of Prostate Cancer Markers

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Cells were starved with phenol red-free and serum free-medium for at least 48 h and treated with the indicated drugs and/or androgens. RNA was extracted with a GenElute Mammalian Total RNA miniprep kit (Sigma-Aldrich). cDNA was synthesized from 1 μg RNA in a reverse transcription reaction using the iScript cDNA Synthesis Kit (Bio-Rad, Hercules, CA). Quantitative PCR (qPCR) analysis was conducted in triplicate with primers for PSA, TMPRSS2, FKBP5, and RPLPO described previously3 (link), with an ABI 7500 Real-Time PCR machine (Applied Biosystems) using iTaq Fast SYBR Green Supermix with ROX (Bio-Rad) in 96-well plates at a final reaction volume of 20 μL. Accurate quantitation of each mRNA was achieved by normalizing the sample values to RPLPO and to vehicle-treated cells.
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10

Quantitative Analysis of Androgen Responsive Genes

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Cells were starved with phenol red-free and serum free-medium for at
least 48 h and treated with the indicated drugs and/or androgens. RNA was
extracted with a GenElute Mammalian Total RNA miniprep kit (Sigma-Aldrich).
cDNA was synthesized from 1 μg RNA in a reverse transcription
reaction using the iScript cDNA Synthesis Kit (Bio-Rad, Hercules, CA).
Quantitative PCR (qPCR) analysis was conducted in triplicate with primers
for PSA, TMPRSS2, and
RPLPO (housekeeping gene) in an ABI 7500 Real-Time PCR
machine (Applied Biosystems) using iTaq Fast SYBR Green Supermix with ROX
(Bio-Rad) in 96-well plates at a final reaction volume of 20 μL.
Accurate quantitation of each mRNA was achieved by normalizing the sample
values to RPLPO and to vehicle-treated cells.
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