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5 protocols using epr21769

1

Quantifying CD8+ T Cells in Tumor Samples

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Paraffin tumor sections were prepared following routine protocols for immunohistochemistry. Sections were stained with anti-CD8α (1:500 dilution; Abcam, EPR21769) and then with the secondary antibody conjugated with Alexa Fluor 568 (1:500 dilution; Invitrogen). Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) (Vector Laboratory). Immunofluorescence-stained slides were visualized with a fluorescent microscope aided by Slidebook software (Olympus). The number of CD8+ cells was counted in randomly picked four fields of each slide. The number of CD8+ staining was directly counted or quantified using the particle analysis tool of ImageJ software (National Institutes of Health). The percent abundance of CD8+ staining was calculated by normalizing CD8+ count to the DAPI+ count.
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2

Assessing Tumor Immune Landscape

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To evaluate the changes in immunogenic microenvironment in treated tumors, we collected tumors seven days after the last treatment and incubated paraformaldehyde-fixed tumor tissue sections with primary antibodies (CD8, PD1) for 2 h at 37 °C and then washed them with PBS three times. CD8 (EPR21769, Abcam) and PD1 (EPR20665, Abcam) were purchased from Abcam company. Image-Pro Plus 6.0 was adopted to analyze each, and mean density (IOD/area) was used to analyze protein expression.
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3

Multicolor Immunohistochemistry for Immune Profiling

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For multiple fluorescence immunohistochemistry, Liu et al. can be referred to (26 (link)), and a four-color multiple fluorescence immunohistochemistry staining kit (Absin, Shanghai, China) was used. Briefly, the slices were processed for heat-mediated antigen retrieval by using citric acid buffer. The sections were blocked with goat serum, and then primary antibody was added and incubated overnight at 4°C. On the next day, the sections were washed with TBST and incubated with a second antibody for 15 min, then washed with TBST, and incubated with tyramine signal amplification (TSA) monochrome fluorescent dye for 10 min, after which the above-mentioned steps were repeated. Finally, 4′6-diamino-2-phenylindole (DAPI) was used for nuclear staining. All images were acquired by using Nikon A1 plus a laser confocal microscope. The primary antibodies used for immunofluorescence were anti-CTLA4 antibody (CAL49; 1:500, Abcam), anti-CD4 antibody (EPR6855; 1:500, Abcam), anti-CD4 antibody (EPR19514; 1:1,000, Abcam), anti-CD8 alpha antibody (EPR21769; 1:2,000, Abcam), and anti-CD8 alpha antibody (EPR22483-288; 1:1,000, Abcam).
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4

Tissue Microarray Analysis of Immune Markers

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Representative cancer tissues areas were marked on haematoxylin–eosin‐stained slides, and corresponding formalin‐fixed paraffin‐embedded blocks were sampled for TMA construction using a Manual Tissue Microarrayer (MiniCore, Mitogen, Hertford, UK). All tumour spots were punched out of the tumour centre.
The following primary antibodies were used for immunohistochemistry (IHC): PD‐L1 (E1L3N, Cell Signaling Technology, Danvers, MA, USA), Siglec‐15 (ab198684, Abcam, Cambridge, UK), CD3 (SP7, Abcam), CD4 (EPR19514, Abcam), CD8 (EPR21769, Abcam), Foxp3 (236A1E7, Abcam), CD45RO (UCH‐L1, Abcam), CD68 (KP1, Abcam), CD15 (SP159, Abcam), p53 (MX008, Maxim Biotechnology, Fuzhou, PR China), BRCA1 (MS110, Abcam), and BRCA2 (EPR23442‐43, Abcam). All slides were automatically stained using a BOND‐III immunostaining instrument (Leica Biosystems, Wetzlar, Germany) as per the manufacturer's instructions. Colon and prostate cancer tissues were used as positive controls for Siglec‐15 according to the antibody manufacturer's instructions and negative controls were prepared without the primary antibody.
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5

Immunohistochemical Analysis of Mouse and Human Tissues

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Mouse tissues were collected and fixed in 10% formalin-neutral buffer. Paraffin embedding and Hematoxylin and Eosin (H&E) staining were performed at BCM Breast Center Histopathology Core. Antibodies: GFP (1:500, ab13970, Abcam), Ki67 (1:200, ab15580, Abcam), p-P27 (1:100, 71–7700, Zymed), Jagged-1 (1:100, ab7771), 2 different clones of S100A8 (1:5000, MAB3059, R&D Systems) used for mouse tissue and MRP8 (S100A8) (1:400, EPR3554, Abcam) used for human samples, CD4 (1:200, EPR19514, Abcam), CD8 (1:200, EPR21769, Abcam), F4–80 (1:200, CI:A3–1, Invitrogen), FoxP3 (1:200, FJK-16S, eBioscience), CD3 (1:400, A045229–2, Agilent), CD45 (1:200, 103102, Biolegend), and DAPI (R37606, Invitrogen). H&E and IHC images were scanned and quantified by Aperio ImageScope 11.2.0.780 (Aperio Technologies). IF images were scanned on an Axioscan and analyzed by using Zen Blue 3.1 (Zeiss). Human patient samples were purchased from Oregon Health and Science University (SR0494).
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