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4 protocols using rnazol rt rna isolation reagent

1

Quantifying lncRNA TUG1 and PTEN mRNA Expression

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Total RNA was extracted from plasma using RNAzol® RT RNA Isolation Reagent (Sigma-Aldrich). High-Capacity cDNA Reverse Transcription Kit (Thermo Fisher Scientific) was used to performed reverse transcription. To detect the expression of lncRNA TUG1 and PTEN mRNA, Luna® Universal One-Step RT-qPCR Kit (NEB) was used to prepare PCR reaction systems. Primers of lncRNA TUG1 and β-actin were designed and synthesized by GenePharma (Shanghai, China). The expression of lncRNA TUG1 was normalized to endogenous controls β-actin using the 2−ΔΔCT method.
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2

RNA Isolation and RT-qPCR Analysis

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Tissue specimens were ground in liquid nitrogen, followed by the addition of RNAzol® RT RNA Isolation Reagent (Sigma-Aldrich). In vitro cultured cells were directly mixed with RNAzol® RT RNA Isolation Reagent to extract total RNA. Expression levels of POU3F3 and MEG3 were measured by RT-qPCR. Briefly, total RNA samples were reversely transcribed into cDNA using SuperScript IV Reverse Transcriptase (Thermo Fisher Scientific). Luna® Universal One-Step RT-qPCR Kit (NEB) was used to prepare PCR mixtures with SYBR Green (NEB) as the fluorophore. With GAPDH as endogenous control, qPCRs were performed through the following conditions: 2 min at 95 °C, followed by 40 cycles of 15 s at 95 °C and 40 s at 55 °C. All data normalizations were performed according to the 2−ΔΔCT method [18 (link)]. Primer sequences were: MEG3 forward 5′-CTGCCCATCTACACCTCAC-3′ and reverse 5′-CTCTCCGCCGTCTGCGCTA GGG-3′, POU3F3 forward 5′-TCATCCTTCAGRGRCCATCC-3′ and reverse 5′-ATC TCAGATTCCTGGGCTGG-3′, GAPDH forward 5′-ACCACAGTCCATGCCATCA-3′ and reverse 5′-CCACCACCCTGTTGCTGTA-3′.
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3

Quantifying PTCSC3 Expression by RT-qPCR

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To detect PTCSC3 expression, total RNAs were extracted using RNAzol® RT RNA Isolation Reagent (Sigma-Aldrich, St. Louis, MO, USA) and reverse transcribed into cDNAs using RevertAid RT Reverse Transcription Kit (Thermo Fisher Scientific). All PCR reactions were prepared using SYBR® Green Quantitative RT-qPCR Kit (Sigma-Aldrich, St. Louis, MO, USA) and carried out on Applied Biosystems 2720 Thermal Cycler with GAPDH as the endogenous control. Primers of PTCSC3 and GAPDH were designed and synthesized by Sangon (Shanghai, China). PTCSC3 expression levels were normalized to GAPDH using the 2−ΔΔCt method.
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4

Quantitative Analysis of CASC11 and miRNA-182

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To detectCASC11 and miRNA-182, total RNA and miRNA extractions were performed using RNAzol® RT RNA Isolation Reagent (Sigma-Aldrich‎) and mirVana miRNA Isolation Kit (Thermo Fisher Scientific), respectively. Reverse transcriptions were performed using AMV Reverse Transcriptase (NEB, USA) and TaqMan MicroRNA Reverse Transcription Kit (Thermo Fisher Scientific), respectively. In total RNA and miRNA reverse transcriptions, 1.2ug total RNAs and 100 ng miRNAs were used in 20 ul system. Luna® Universal One-Step RT-qPCR Kit (NEB) and TaqMan MicroRNA Reverse Transcription Kit (Thermo Fisher Scientific) were used to prepare PCR mixtures. 1 ul cDNA was added into 20 ul PCR reaction system. Expression of CASC11 and miRNA-182 was normalized using 2−ΔΔCT method.
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