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6 protocols using blood total rna rapid extraction kit

1

Quantification of HOTAIR lncRNA Expression

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Total RNA from tissues (50 mg) was isolated by Trizol Reagent (TaKaRa, Tokyo, Japan) and plasma samples (200 μL) were isolated using the Blood Total RNA Rapid Extraction Kit (BioTeke, China). Total RNAs were then reverse transcribed using a PrimeScriptRT Reagent Kit with gDNA Eraser (TaKaRa) following the manufacturer's protocol. HOTAIR expression was measured by real time‐polymerase chain reaction (RT‐PCR) using SYBR Green assays (Takara) in a 7500 Fast Real‐Time PCR System (Applied Biosystems, Foster City, CA, USA). β‐actin was used to normalize the relative levels of lncRNA. Primers were designed with Primer 5, synthesized by Sangon Biotech (Shanghai, China), and sequenced as follows: 5′‐GGTAGAAAAAGCAACCACGAAGC‐3′(forward) and 5′‐GCACGAAGGCTCA TCATTCA‐3′ (reverse) for HOTAIR;5′‐TCCTCTCCCAAGCCACACA‐3′ (forward) and 5′‐GCACGAAGGCTCATCATTCA‐3′ (reverse) for β‐actin. The relative expression was calculated using 2 − ΔΔCt methods.10
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2

Quantifying lincRNA-ROR Expression

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Total RNA was extracted from BC tissues and cells using Trizol Reagent (Takara, Tokyo, Japan). Total RNA in plasma was extracted using a Blood Total RNA Rapid Extraction Kit (BioTeke Corporation, Beijing, China). The reverse transcription (RT) reaction was conducted using a PrimeScript RT reagent Kit with gDNA Eraser (Takara), according to the manufacturer's instructions. RT reactions were performed at 42°C for two minutes, 37°C for 15 minutes, 85°C for five seconds, and 4°C for 10 minutes. LincRNA‐ROR expression levels were detected by real‐time PCR using SYBR Premix Ex Taq II (Takara) in a 7500 Fast Real‐Time PCR System (Applied Biosystems, Foster City, CA, USA). The PCR conditions consisted of an initial polymerase activation step at 95°C for 30 seconds, 40 cycles of 95°C for five seconds, and 60°C for 30 seconds, followed by a dissociation cycle of 95°C for 15 seconds, 60°C for 60 seconds, 95°C for 15 seconds, and 60°C for 15 seconds. The relative expression levels of lincRNA‐ROR were normalized by β‐actin. The sequences of lincRNA‐ROR and β‐actin were as follows: lincRNA‐ROR: 5′‐CTCAGTGGGGAAGACTCCAG‐3′ (forward), 5′‐AGGAAGCCTGAGAGTTGGC‐3′ (reverse); β‐actin: 5′‐TCCTCTCCCAAGTCCACACA‐3′ (forward), 5′‐GCACGAAGGCTCATCATTCA‐3′ (reverse). Each reaction was performed in triplicate. The 2−ΔΔCT method was used to calculate relative expression levels.18
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3

Rapid RNA Extraction from Plasma, Serum, and Tissue

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The Blood Total RNA Rapid Extraction Kit (BioTeke Corporation, Beijing, China, #RP1102) was utilized to extract total RNA from 300 μL of plasma and then used to extract RNA from serum. According to the recommendations, 600–800 mg of clinical tissue samples were extracted using TRIzol (Invitrogen, Germany, #15596018). One milliliter was lysed, extracted, and/or refrigerated at −80°C for storage. Cells under excellent growth conditions were either kept at −80°C in the refrigerator or digested with TRYSPIN 0.25% EDTA (Gibco, Grand Island, NY, #25200‐072) and lysed with TRIzol (Invitrogen, Germany, #15596018) 1 mL.
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4

RNA Isolation and cDNA Synthesis

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Based on the reagent manufacturer’s protocol, the collected serum samples (300 μl) had total RNA isolation using the blood total RNA rapid extraction kit (spin column method) (BioTeke, Beijing, China). The concentration and purity of each RNA were evaluated through a spectrophotometer by determining the absorbance ratio of A260/A280, yielding values between 1.8 and 2.1. The total RNA was kept at − 80 °C or reverse transcription experiments were immediately performed. cDNA synthesis was carried out with the Revert Aid RT reverse transcription kit (Thermo Fisher Scientific).
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5

Quantitative Analysis of tRF-17-WS7K092 Expression

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Serum total RNA was extracted using a rapid blood total RNA extraction kit (BioTeke Corporation, China), while total RNA from tissues and cells was extracted using a TRIzol reagent (Invitrogen, Germany). cDNA was produced using the RevertAid RT Reverse Transcription Kit (Thermo Fisher Scientific, USA), and quantitative real-time PCR (qRT-PCR) was performed on ABI QuantStudio 5 with the 20 μL reaction system, which included 10 μL ChamQ Universal SYBR qPCR Master Mix (Vazyme Biotech Co., Ltd., China), 1 μL primers, 3 μL enzyme-free water, and 5 μL cDNA. U6 was used as an internal reference, and the expression of tRF-17-WS7K092 was calculated by the 2−∆∆CT method. All primers used in the study were synthesized by RiboBio (Guangzhou, China).
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6

Quantification of tRF-27-FDXXE6XRK45 Expression

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Serum total RNA was extracted using the Rapid Blood Total RNA Extraction Kit (BioTeke Corporation, Wuxi, China), while total RNA from tissues and cells was extracted using the RNA-easy Isolation reagent (Vazyme, Nanjing, China). We used tRF-27-FDXXE6XRK45 as the target molecule and RNU6B as the internal reference to produce 10 µL cDNA using RevertAid RT Reverse Transcription Kit (Thermo Fisher Scientific, USA) and specific primers (Ribobio Corporation, Guangzhou, China), including tRF-27-FDXXE6XRK45 RT and RNU6B RT. During the process, the prepared 10µL mix was amplified at 42°C for one hour, then inactivated at 70°C for five minutes and stored temporarily at 4°C or long-term at -20°C after completion. Next, real-time quantitative PCR was performed on ABI QuantStudio 5 using a 20µL reaction system consisting of 10µL ChamQ Universal SYBR qPCR Master Mix (Vazyme Biotech Co., Ltd., China), 5µL cDNA, 1µL forward primer, 1µL reverse primer (Ribobio Corporation, Guangzhou, China) and 3µL enzyme-free water. Finally, the expression level of tRF-27-FDXXE6XRK45 was calculated by 2-ΔΔCT method, with the following formula: ΔCT=Ct (target)-Ct (reference) and ΔΔCT=ΔCT (experimental group)-ΔCT (control group). The above steps are performed according to the manufacturer's instructions.
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