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Retroscript reverse transcription kit

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Retroscript reverse transcription kit is a laboratory reagent used to convert RNA into complementary DNA (cDNA) molecules. This process, known as reverse transcription, is a fundamental step in various molecular biology techniques such as gene expression analysis and complementary DNA library construction.

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43 protocols using retroscript reverse transcription kit

1

Olfactory Mucosa RNA Extraction and qPCR Analysis

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RNA was extracted from olfactory mucosa using TRIzol (Life Technologies) followed by DNase I digestion, according to the manufacturers' protocols. cDNA was generated using the RETROscript Reverse Transcription Kit (Thermo Fisher Scientific) with Oligo dTs. Primer sequences can be found in Supplementary Table 1. qPCR was performed on a StepOnePlus Real-Time PCR system (Applied Biosystems) using Maxima SYBR green/ROX qPCR Master Mix × 2 (Thermo Fisher Scientific). All reactions were performed in triplicate; Ct values were averaged for each gene in each sample. Results were analysed by the 2 −ΔΔCt method69 (link) with normalization to the geometric mean of Actb, Gapdh and Ubc70 (link). For details, see Supplementary Methods.
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2

Quantitative Analysis of Midbrain Gene Expression

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Bilateral 1.0mm2 tissue punches were obtained from 300 µm coronal ventral midbrain slices of experimental mice. Punches were collected while visualizing GFP on an inverted fluorescence microscope and RNA was extracted immediately, or following tissue storage at -70°C, using RNAqueous®-Micro Kit RNA isolation (Thermo Fisher Scientific). Extracted RNA was reverse transcribed using RETROscript® reverse transcription kit (Thermo Fisher Scientific). Quantitative PCR was performed using the Applied Biosystems® 7500 Real-Time PCR System Machine and software or using the Bio-Rad C1000 Touch Thermal Cycler with CFX96 Real-Time system and software using Taqman® gene expression assays for mouse Rit2 (Mm0172749_mH), TH (Mm00447557_m1), DAT (Mm00438388_m1), DRD2 (Mm00438541_m1), Pitx3 (Mm01194166_g1), Nurr1 (Nr4a2, Mm00443060_m1), Rit1 (Mm00501400_m1), Vps35 (Mm00458167_m1). All Ct values were normalized to internal GAPDH (Mm99999915_g1) expression levels, to determine ΔCt values. For linear comparisons, data were analyzed by comparing 2-ΔCt values.
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3

Quantification of Hippocampal Gene Expression

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V1 slices (400 μm) were obtained from the animals as explained in acute slice preparation section above. V1 L2/3 was isolated by performing micro-dissections. The slices were quickly frozen on dry ice and stored for mRNA separation. The total RNA content was separated from collected V1 slices using TRIzol-chloroform extraction (ThermoFisher Cat# 10296-010). cDNA was obtained from RNA using the RETROscript Reverse Transcription kit (ThermoFisher Cat# AM1710). For quantification, real-time qPCR was performed using a Maxima SYBR Green/Rox Q-PCR Master Mix (ThermoFisher Cat# K0221), in a StepOnePlusTM Real-Time PCR system (Applied Biosystems Cat# 4376600; RRID:SCR_015805). The following primer sequences were used for each gene:

H1a: forward primer (FP) 5′-CCAGAAAGTATCAATGGGACAGATG-3′; reverse primer (RP) 5′-TGCTGAATTGAATGTGTACCTATGTG-3′

H1b/c: FP 5’-GGCAAACACTGTTTATGGACTGG-3’; RP 5’-CTCTGTTCTTGGAGTTCTCTGGC-3’

GFP: FP 5′-GGTCTTGTAGTTGCCGTGT-3′; RP 5′-CCTGAAGTTCATCTGCACCA-3′

GAPDH: FP 5′-CTGGAGAAACCTGCCAAGTA-3′; 5′-AGTGGGAGTTGCTGTTGAAG-3′

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4

Quantitative RT-PCR from Midbrain Punches

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Bilateral 1.0mm2 tissue punches were obtained from 300μm coronal ventral midbrain slices of experimental mice. Punches were collected while visualizing GFP on an inverted fluorescence microscope and RNA was extracted immediately, or following tissue storage at −70°C, using RNAqueous®-Micro Kit RNA isolation (Thermo Fisher Scientific). Extracted RNA was reverse transcribed using RETROscript® reverse transcription kit (Thermo Fisher Scientific). Quantitative PCR was performed using the Applied Biosystems® 7500 Real-Time PCR System Machine and software or using the Bio-Rad C1000 Touch Thermal Cycler with CFX96 Real-Time system and software using Taqman® gene expression assays for mouse Rit2 (Mm0172749_mH), TH (Mm00447557_m1), DAT (Mm00438388_m1), DRD2 (Mm00438541_m1), Pitx3 (Mm01194166_g1), Nurr1 (Nr4a2, Mm00443060_m1), Rit1 (Mm00501400_m1), Vps35 (Mm00458167_m1). All Ct values were normalized to internal GAPDH (Mm99999915_g1) expression levels, to determine ΔCt values. For linear comparisons, data were analyzed by comparing 2−ΔCt values.
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5

Midbrain Tissue Punching and Gene Expression Analysis

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RNA was isolated from mouse midbrain punches using RNAqueous-Micro Kit RNA isolation (Thermo Fisher Scientific). Ventral midbrain samples were bilaterally collected from 300 μm acute coronal mouse midbrain slices using a 1.0 mm2 tissue punch. Slices were visualized on an inverted fluorescence microscope during punching to confirm cell transduction via GFP reporter expression and to enrich for GFP-positive cells. RNA was extracted and reverse transcribed using RETROscript reverse transcription kit (Thermo Fisher Scientific). qPCR was performed and analyzed using the Applied Biosystems 7500 Real-Time PCR System Machine and software or using the Bio-Rad C1000 Touch Thermal Cycler with CFX96 Real-Time system and software, using Taqman gene expression assays for mouse DRD2 exon 2 to 3 (Mm00438541_m1), Vps35 (Mm00458167_m1), Rit2 (Mm0172749_mH), mGlu5 exon 7 to 8 (Mm01317985_m1), and GAPDH (Mm99999915_g1).
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6

Quantitative RT-PCR Analysis of PI3K, AKT, and VEGF

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Total RNA from the tumor tissues was isolated using TRIzol (Takara Bio, Inc., Otsu, Japan), according to the manufacturer's protocol. RETROscript™ Reverse Transcription kit (Thermo Fisher Scientific, Inc., Waltham, MA, USA) and 1 µg RNA were used for cDNA synthesis. SYBR Green One-Step qRT-PCR kit (Thermo Fisher Scientific, Inc.) and a 7900 HT Fast Real-Time PCR System (Applied Biosystems; Thermo Fisher Scientific, Inc.) were used for qPCR. Data were normalized to the internal control GAPDH and presented as an expression fold change using the 2−ΔΔCq method (16 (link)). Thermocycling conditions were as follows: 95°C for 3 min, followed by 40 cycles at 94°C for 30 sec, 60°C for 30 sec and 72°C for 60 sec. The gene-specific primers were selected according to the literature. The primers were synthesized by Sangon Biological Engineering Technology Services Co., Ltd. (Shanghai, China). The primer sequences were as follows: PI3K, forward 5′-CGTTTCTGCTTTGGGACAAC-3′ and reverse 5′-CCTGATGATGGTGGAG-3′; AKT, forward 5′-TGAGAGAAGCCACGCTGTC-3′ and reverse 5′-CGGAGAACAAACTGGATGAA-3′; VEGF, forward 5′-TAGACGTTCCCTGCCAGCAA-3′ and reverse 5′-AGCATCCGAGGAAAACATAAAATCTT-3′; and GAPDH, forward 5′-AACGGATTTGGTCGTATTGGG-3′ and reverse 5′-TCGCTCCTGGAAGATGGTGAT-3′.
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7

Ventral Midbrain RNA Profiling

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Bilateral 1.0mm2 tissue punches were obtained from 300μm coronal ventral midbrain slices of experimental mice. Punches were collected while visualizing GFP on an inverted fluorescence microscope and RNA was extracted immediately, or following tissue storage at −70°C, using RNAqueous®-Micro Kit RNA isolation (Thermo Fisher Scientific). Extracted RNA was reverse transcribed using RETROscript® reverse transcription kit (Thermo Fisher Scientific). Quantitative PCR was performed using the Applied Biosystems® 7500 Real-Time PCR System Machine and software or using the Bio-Rad C1000 Touch Thermal Cycler with CFX96 Real-Time system and software using Taqman® gene expression assays for mouse Rit2 (Mm0172749_mH), TH (Mm00447557_m1), DAT (Mm00438388_m1), DRD2 (Mm00438541_m1), Pitx3 (Mm01194166_g1), Nurr1 (Nr4a2, Mm00443060_m1), Rit1 (Mm00501400_m1), Vps35 (Mm00458167_m1). All Ct values were normalized to internal GAPDH (Mm99999915_g1) expression levels, to determine DCt values. For linear comparisons, data were analyzed by comparing 2−ΔCt values.
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8

Quantitative Analysis of Dopamine Transporter

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RNA was isolated from mouse midbrain using the RNAqueous-Micro Kit RNA isolation (Thermofisher) and was reverse transcribed using a RETROscript reverse transcription kit (Thermofisher). rtPCR was performed and analyzed using an Applied Biosystems 7500 Real-Time PCR System Machine and software. Taqman gene expression assays for mouse DAT (Mm00438388_m1) and GAPDH (Mm99999915_g1) were assessed.
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9

T. gondii Tg244440 Cloning and Expression

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Parasites released from infected cells were pelleted by centrifugation and the RNA was extracted using the RNeasy Mini kit (Qiagen, Manchester, UK) following the manufacturer’s recommendations. Any potential contaminant DNA was eliminated by using the TURBO DNA-free Kit (Thermo Fisher, Loughborough, UK). The RNA was precipitated overnight at −80 °C using 0.3 M ammonium acetate, washed with 70% ethanol, resuspended in nuclease-free water and used for cDNA synthesis utilizing the Invitrogen RETROscript Reverse Transcription Kit (Thermo Fisher), following the manufacturer’s instructions, and a provided set of random primers.
Tg244440 was amplified from T. gondii cDNA with primers HDK1328 (forward; TTCATCAAGCTTATGAGTACAATCGAAGAGAGAGCC; HindIII) and HDK1329 (reverse; ATGATAGGATCCCTAGTAAGCGAGAGCGAGGTAC; BamHI) using the high-fidelity Phusion DNA polymerase (New England Biolabs) and cloned into pHD1336 [64 (link)] after overnight digestion with HindIII and BamHI. The final plasmid was then sequenced and used for transfection into T. brucei.
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10

Organoid RNA Extraction and qPCR Analysis

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RNA from the organoids was extracted using the RNeasy Kit (Qiagen, Limburg, Netherlands, 74104) with on-column DNase treatment. cDNA was synthesized using a RETROscript® Reverse Transcription Kit (Thermo Scientific, AM1710). qPCR was performed using PowerUp SyGreen Mix (Thermo Scientific, A25741). Normalization was done using the housekeeping gene Hmbs. Sod1-F: 5′-GAGGGTAGCAGATGAGTCTGAG-3′, Sod1-R: 5′-GAGTCTTGTTGCTAAGTAGAG-3′;Lgr5-F:5′-CCTACTCGAAGACTTACCCAGT-3′, Lgr5-R: 5′-GCATTGGGGTGAATGATAGCA-3′;Lyz-F:5′-ACTCCTCCTTGCTTTCTGTC-3′, Lyz-R: 5′-GTCGGTGCTTCGGTCTC-3′; Wnt3-F: 5′-TGGAACTGTACCACCATAGATGAC-3′, Wnt3-R: 5′-ACACCAGCCGAGGCGATG-3′; Hmbs-F:5′-GATGGGCAACTGTACCTGACTG-3′, Hmbs-R: 5′-CTGGGCTCCTCTTGGAATG-3′.
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