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5 protocols using rad51

1

Isolation and Characterization of HPV-Positive Keratinocytes

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Healthy human foreskin keratinocytes (HFKs) were isolated from deidentified neonatal specimens. HFK cells were transfected with HPV16 or HPV31 genomes to generate HFK-16 and HFK-31 cell lines that contain episomal HPV DNA as previously described (18 (link)). CIN 612 cells were isolated from a cervical cancer biopsy specimen and contain HPV31 episomes (19 (link)). All keratinocytes were cocultured in E-media with growth-arrested NIH 3T3 fibroblasts as described previously (3 (link)). Antibodies to phosphorylated CHK1 (pCHK1) (catalog no. 12302; Cell Signaling Technology [CST]), phosphorylated CHK2 (pCHK2) (catalog no. 2661; CST), FANCD2 (catalog no. 100182; Novus), phosphorylated H2Ax (γH2AX) (catalog no. 05636; Millipore), phosphorylated SMC1 (pSMC1) (catalog no. 4805S; CST), BRCA1 (catalog no. OP92; Millipore), RAD51 (catalog no. NB100148; Novus), and TOP2β (catalog no.A300-950A; Bethyl Laboratories) were used.
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2

Immunofluorescence Staining of DNA Damage Response

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The immunofluorescence staining was performed as described previously[45 (link)]. Briefly, cells were plated onto poly-L-lysine treated glass coverslips and cultured for 24 hours in RPMI1640 medium with 10% FBS and Penicillin-Streptomycin to allow cells to adhere to the substrate. Cells were radiated with 2 Gy in a radiator before the cultural medium were changed to RPMI1640 with either DMSO or YM155 (0 hour). At 0, 2, 4, 12 hours, coverslips were rinsed twice with PBS for 5 min. Cells were fixed in fixative solution, permeabilized with 0.1% triton in PBS for 10 min at room temperature, and blocked with 3% ovalbumin in PBS (blocking solution). Primary antibodies (γH2AX from Cell Signaling Technology) and RAD51 (Novus Biologicals) were diluted at 1:200 (or as recommended by the manufacturer) in blocking solution and incubated overnight at 4°C. Cell were rinse 3 times with PBS for 5 min, incubated for 30 minutes at 37°C with the respective secondary antibodies diluted 1:200 in blocking buffer. Confocal images were obtained using an Axiovert 200 M Zeiss microscope equipped with Zen 2009 software (Carl Zeiss Microscopy, Gottingen, Germany). Number of foci per cell were counted using Image J (NIH) software. Data analysis and statistical differences were determined with Student’s t-test using the Excel software.
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3

DNA Damage Response Signaling Pathway

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p16 (#550834; BDPharmingen), phosphorylated CHK1 (pCHK1) (#12302; CST), phosphorylated CHK2 (pCHK2) (#2661; CST), FANCD2 (#100182; Novus), phosphorylated H2Ax (γH2AX) (#05636 Millipore), phosphorylated SMC1 (pSMC1) (#4805S; CST), BRCA1 (#OP92; Millipore), RAD51 (#NB100148; Novus), APOBEC3A (#HPA043237; Sigma), APOBEC3B (#NBP256411; Novus), APOBEC3B (mAb 5210-87-13) (Gift from Reuben Harris lab)) [31 (link)]
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4

Immunofluorescence Imaging of Meiotic Proteins

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Immunofluorescence was performed as described previously [30 (link)], with minor modifications. Primary antibodies used were HIM-3 (a kind gift from M. Zetka), RAD-51 (Novus), ZHP-3 (a kind gift from V. Jantsch), and SYP-1 (a kind gift from A. Villeneuve). Images were acquired using the Olympus IX81 Quorum Spinning Disk confocal or the Nikon A1R confocal microscope. z stacks were analyzed using the Volocity Image analysis software (PerkinElmer).
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5

BRCA1 Reconstitution in HCC1937 Cells

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All the chemicals were purchased from Sigma except for those specifically mentioned. Anti-γH2AX antibody was purchased from Cell Signaling Technology; Anti-53BP1 and Rad51 antibodies were purchased from Novus Biologicals. HCC1937 cells were obtained from ATCC in 2008, HCC1937 cells reconstituted with wild-type BRCA1 (HCC1937 BRCA1 cells) were generated in our lab in 2008.
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