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9 protocols using p p65 s536

1

Regulation of Epithelial-Mesenchymal Transition

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17β-estradiol (E2) and doxycycline hyclate (DOX) were purchased from Sigma. TNFα was purchased from R&D Systems. ICI and IKK7 were purchased from Sigma (#I4409) and SelleckChem (#S2882), respectively. Antibodies for IKKβ (#2370), IKKα (#2682), p-IκBα (#2859), IκBα (#4814), p-p65 S536 (#3033), ERα (#8644), E-cadherin (#3195P), vimentin (#5741P), CK8/18 (#4546), GATA3 (#5852) and P63-α (#4892) were purchased from Cell Signaling. Antibodies for p65 (#sc-372) and Fibronectin (#sc-9068) were purchased from Santa Cruz. Antibodies for FoxA1 (#ab55178), and CK14 (#ab53115) were purchased from Abcam. Antibodies for CK5 (#CK5-L-CE) and β-actin (#A5441) were purchased from, Leica and Sigma, respectively.
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2

Antibody-based Detection of DNA Damage Signaling

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The following antibodies were used: DNMT1 (Abcam ab13537; 1:1000), cGAS (Millipore ABF124; 1:1000 for western blot), STING (Thermo Fisher Scientific PA5–70420; 1:1000 for western blot), MX1 (Thermo Fisher Scientific PA5–22149; 1:1000 for western blot), p65 (Cell Signaling Technology 8242; 1:1000 for western blot), p-p65 S536 (Cell Signaling Technology 3033; 1:1000 for western blot), Chk2 (Cell Signaling Technology 2662; 1:1000 for western blot), p-Chk2 T68 (Cell Signaling Technology 2661; 1:1000 for western blot), p53 (Cell Signaling Technology 2524: 1:500 for western blot), p-p53 S15 (Cell Signaling Technology 12571: 1:500 for western blot), S9.6 (Kerafast ENH001: 1:500 for immunofluorescence), J2 (Kerafast ES2001: 1:60 for immunofluorescence), LINE-1 ORF1p (Millipore MABC1152; 1:1000 for western blot), γH2AX (Millipore 05–636-I; 1:1000 for western blot).
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3

Yinqin Oral Liquid Composition and Analysis

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Yinqin Oral Liquid (YOL) was provided by su zhou si yuan natural products research and development Co. Ltd. YOL is composed of honeysuckle, scutellaria, bupleurum and cicada, decompressed and concentrated to 2 g/mL through boiling and alcohol sinking, and stored at 4°C for later use. Primary antibodies: COX-2 and iNOS antibodies were purchased from Abcam (Cambridge, UK); glyceraldehyde-3-phosphate dehydrogenase (GAPDH) antibody was obtained from Millipore (Billerica, MA, USA); PI3K, p-AKT, AKT, p-Stats, Stat3 and p-p65 (S536) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA); and p65 antibodies was obtained from Santa Cruz (CA, USA). The horseradish peroxidase (HRP)-conjugated sheep anti-mouse or anti-rabbit secondary antibodies were purchased from Thermo Fisher (Waltham, MA, USA). The proteins were visualized using an ECL detection kit (Thermo Fisher).
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4

Innate Immunity and DNA Damage Response Pathway Analysis

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Etoposide, 4-hydroxytamoxifen, puromycin, and polybrene were purchased from Sigma. Hygromycin was from Gemini Bio Products, and luciferin was from PerkinElmer. Recombinant human IL1α protein (used at 20 ng/ml) was from R&D Systems, and p38 MAPK inhibitor from Selleck Chemicals.
The following antibodies were described previously: Flag, p16, Lamin B1, GAPDH, and GFP5 (link). Other antibodies used include: γH2AX (Abcam #ab2893 and Cell Signaling Technology #9718), STING (Cell Signaling Technology #13647 and LSBio #LS-B7237), cGAS (Cell Signaling Technology #15102 and Santa Cruz Biotechnology #sc-245858), human IL1α (Abcam #ab9614), IL8 (Abcam #ab18672), p-ATM S1981 (Abcam #ab81292), p-p53 S15 (Cell Signaling Technology #9284), p-p65 S536 (Cell Signaling Technology #3033), p65 (Cell Signaling Technology 8242), NRas (Santa Cruz Biotechnology #sc-31), CD3 (Abcam #ab16669), Mac2 (BioLegend #125401), mouse IL1α (R&D Systems #AF-400), p21 (#sc-471), and H3 (Active Motif #39763).
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5

Innate Immunity and DNA Damage Response Pathway Analysis

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Etoposide, 4-hydroxytamoxifen, puromycin, and polybrene were purchased from Sigma. Hygromycin was from Gemini Bio Products, and luciferin was from PerkinElmer. Recombinant human IL1α protein (used at 20 ng/ml) was from R&D Systems, and p38 MAPK inhibitor from Selleck Chemicals.
The following antibodies were described previously: Flag, p16, Lamin B1, GAPDH, and GFP5 (link). Other antibodies used include: γH2AX (Abcam #ab2893 and Cell Signaling Technology #9718), STING (Cell Signaling Technology #13647 and LSBio #LS-B7237), cGAS (Cell Signaling Technology #15102 and Santa Cruz Biotechnology #sc-245858), human IL1α (Abcam #ab9614), IL8 (Abcam #ab18672), p-ATM S1981 (Abcam #ab81292), p-p53 S15 (Cell Signaling Technology #9284), p-p65 S536 (Cell Signaling Technology #3033), p65 (Cell Signaling Technology 8242), NRas (Santa Cruz Biotechnology #sc-31), CD3 (Abcam #ab16669), Mac2 (BioLegend #125401), mouse IL1α (R&D Systems #AF-400), p21 (#sc-471), and H3 (Active Motif #39763).
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6

Ginsenoside panaxatriol's anti-cancer effects

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Ginsenoside panaxatriol was obtained from Must Bio-Technology (Chengdu, China). PTX was purchased from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco’s Modified Eagle Medium (DMEM) (11995-040), F-12 nutrient mixture (Ham) and fetal bovine serum (FBS) were bought from Life Technologies (Grand Island, NY, USA). MammoCul medium (human) and supplements were purchased from STEMCELL Technologies (Vancouver, BC, Canada). CellTiter-Glo luminescent cell viability assay kits were purchased from Promega Corporation (Madison, WI, USA). iScript gDNA Clear cDNA Synthesis Kits and iTaq Universal SYBR Green Supermix Kits were purchased from Bio-Rad Laboratories (Hercules, CA, USA). p-IRAK1 S376, IRAK1, p-P65 S536, P65, p-ERK1/2, ERK1/2, BAX, BCL-2 and MCL-1 antibodies were supplied by Cell Signaling Technology (Danvers, MA, USA). Beta-actin antibody was purchased from Sigma–Aldrich (St. Louis, MO, USA).
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7

Antibody-based Detection of DNA Damage Signaling

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The following antibodies were used: DNMT1 (Abcam ab13537; 1:1000), cGAS (Millipore ABF124; 1:1000 for western blot), STING (Thermo Fisher Scientific PA5–70420; 1:1000 for western blot), MX1 (Thermo Fisher Scientific PA5–22149; 1:1000 for western blot), p65 (Cell Signaling Technology 8242; 1:1000 for western blot), p-p65 S536 (Cell Signaling Technology 3033; 1:1000 for western blot), Chk2 (Cell Signaling Technology 2662; 1:1000 for western blot), p-Chk2 T68 (Cell Signaling Technology 2661; 1:1000 for western blot), p53 (Cell Signaling Technology 2524: 1:500 for western blot), p-p53 S15 (Cell Signaling Technology 12571: 1:500 for western blot), S9.6 (Kerafast ENH001: 1:500 for immunofluorescence), J2 (Kerafast ES2001: 1:60 for immunofluorescence), LINE-1 ORF1p (Millipore MABC1152; 1:1000 for western blot), γH2AX (Millipore 05–636-I; 1:1000 for western blot).
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8

Comprehensive Western Blotting and Immunostaining Protocol

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For Western blotting assays, the following antibodies were used: A1CF (1:300, ORIGENE, Inc. Rockville, MD, USA, AP50047PU-N), NKRF (1:2000, Proteintech, Inc. Rosemont, IL, USA, 14693-1-AP), IFN-β (1:300, Proteintech, Inc., 27506-1-AP), p65 (1:1000, Cell Signaling Technology, Inc. Danvers, MA, USA, 6956), p50/105 (1:1000, Cell Signaling Technology, Inc., 13586), p-p65 (Ser536) (1:1000, Cell Signaling Technology, Inc., 3033), IκBα (1:1000, Cell Signaling Technology, Inc. 4814), p-IκBα (Ser32) (1:1000, Cell Signaling Technology, Inc., 2859), NPM1 (1:1000, Proteintech, Inc., 60096-1-Ig), β-actin (1:5000, Sigma-Aldrich, Inc. St. Louis, MO, USA, A1978), and GAPDH (1:5000, Sigma-Aldrich, Inc., SAB2701825).
For Immunofluorescence and immunohistochemistry, the following antibodies were used: A1CF (1:50, ORIGENE, Inc., AP50047PU-N), NKRF (1:200, Santa Cruz Biotechnology, Inc. Santa Cruz, CA, USA, sc-365568), IFN-β (1:50, Proteintech, Inc., 27506-1-AP), p65 (1:200, Cell Signaling Technology, Inc., 6956), and p-p65(S536) (1:200, Cell Signaling Technology, Inc., 3033).
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9

Signaling Pathways in Cartilage Homeostasis

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Antibodies against mTOR (1:1000), p-mTOR (Ser2448) (1:1000), p-ULK1 (S757) (1:1000), Akt (1:1000), p-Akt (S473) (1:1000), NF-κB(p65) (1:1000), p-p65 (S536) (1:1000), acetylated lysine (Ace-lys) (1:1000), and Beclin1(1:1000) were purchased from Cell Signaling Technology Inc. (Beverly, MA, USA). Antibodies targeting Col II (1:1000 for western blotting analysis, 1:200 for immunohistochemistry staining), ULK1 (1:1000), and p62 (1:1000) were purchased from Abcam Inc. (Cambridge, MA, USA). Antibodies against Aggrecan (1:1000 for western blotting analysis, 1:200 for immunohistochemistry staining) and β-actin (1:40,000) were purchased from Sigma-Aldrich in China (Shanghai, China). Rabbit IgG and Protein A/G PLUS-Agarose were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against LC3B (1:1000 for western blotting analysis, 1:200 for immunohistochemistry staining), Lamin B1 (1:1000), and β-tubulin (1:1000) were purchased from Novus Biologicals, Inc. (Littleton, CO, USA), Protein Tech Group (Chicago, IL, USA), and Sangon Biotech (Shanghai, China), respectively. Other reagents were of the highest grade commercially available.
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