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7 protocols using a 1155463

1

Fluorescent Fusion Protein Generation

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Plasmids encoding the mCerulean3 (mCer3), or Venus fluorescence proteins in place of the EGFP coding region in pEGFP-C1 (Clontech) were kind gifts from Mark A. Rizzo (University of Maryland) and Ray Truant (McMaster University) respectively. To generate plasmids encoding the fusion proteins the required coding regions were amplified by PCR and inserted into the plasmids encoding the appropriate fluorescence protein. All of the plasmids included coding sequences for a GGS linker sequence between the coding regions except for VBad (linker sequence, SGLRSRGG) and BimELV (linker sequence, SRGGGPVAT). All the swapping and site-directed mutants were obtained through PCR-based mutagenesis using oligonucleotides from Integrated DNA Technologies and Phusion DNA polymerase from New England Biolabs. ABT-263 was purchased from Selleckchem, A-1155463,A-1331852 and ABT-199 were from Chemietek.
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2

BH3 Mimetic Drugs in Research

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BH3 mimetic drugs used in this study were: ABT-236 (MedChem Express), ABT-199 (MedChem Express), A-1331852 (Chemietek, A-133), A-1155463 (Chemietek, A-115), and S63845 (MedChem Express). FK866, GPP78 and staurosporine were purchased from MedChem Express.
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3

Preparation of Compound Solutions

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Venetoclax (>99.9%, Chemietek, catalog no. CT-A199), A-1155463 (99.5%, Chemietek, catalog no. CT-A115) and NVP-CGM097 (100% optically pure, Chemietek, catalog no. CT-CGM097) were used directly without further purification. Venetoclax, A-1155463 and NVP-CGM097 were each dissolved in DMSO as 10 mM stocks. Stocks were aliquoted and stored at −20 °C until use.
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4

Apoptosis Induction in B-cell Subsets

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Single-cell suspensions from the spleen or BM were cultured with A-1210477 (catalog number CT-A121, ChemieTek, Indianapolis, IN, USA) at a concentration range of 0, 1, 5 or 20 μM, A-1155463 (catalog number CT-A115, ChemieTek) at 0, 10, 100 or 100 nM, or ABT-199 (catalog number A0776, LKT Laboratories, St Paul, MN, USA) at 0, 10, 100 or 1000 nM for 20 h at 37ºC. Cell viability after treatment was assessed by flow cytometry using the TO-PRO-3 dye (catalog number T3605, ThermoFisher, Waltham, MA, USA) after gating on specific B-cell subsets using the gating strategy as shown in Figures 1a and b or as previously published for PC.16 (link) Specific apoptosis was calculated by measuring the altered percentage of TOPRO3 (live) cells within indicated B-cell populations, compared with untreated cells. LC50 values were subsequently calculated using Excel and Graphpad Prism software, and specific apoptosis values after incubation with a concentration range of the inhibitors.
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5

Compound Preparation Protocol

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ABT-199 and WEHI-539 were purchased from Selleck Chemicals (Breda, The Netherlands), A-1155463 and AZD5991 from Chemietek (Indianapolis, USA). 5-Aza-2′-deoxycytidine (Decitabine) and Oxaliplatin were purchased from Sigma Aldrich. All compounds were dissolved in DMSO to a stock of 20 mM, except Oxaliplatin, which was dissolved in water to a stock of 12.5 mM.
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6

Synthesis of BET1-211, BETd-246, BETd-260

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Detailed procedures for the synthesis of BET1-211, BETd-246 and BETd-260 are in SI Scheme I-III. ABT-263 (navitoclax) and ABT-199 (venetoclax) were from Selleck Chemicals. A-1155463 was from ChemieTek.
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7

Chemical Compound Preparation Protocol

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ABT-199, ABT-263, and Q-VD-OPh were purchased from Selleckchem, Houston, TX, US. A-1155463 and AZD5991 were purchased from Chemietek, Indianapolis, IN, US. All compounds were dissolved in dimethyl sulfoxide (DMSO) at a 10 mM stock concentration.
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