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14 protocols using d0819

1

Culturing HT-1080 and MIA PaCa-2 Cell Lines

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The HT-1080 (obtained from ECACC Database, Catalogue No.: 85111505) fibrosarcoma cell line and MIA PaCa-2 (obtained from ATCC Database, ATCC Number: CCL-121), a human pancreatic cancer cell line used in the experiments, were cultured according to ATCC guidelines. Cells were grown in a cell culture incubator (Thermo Scientific, Waltham, MA, USA Forma™ Series II 3111) at 37 °C, 5% CO2, 100% relative humidity. The complete culture medium for the HT-1080 cell line comprised of high glucose DMEM with stable glutamine (Thermo Fisher Scientific, Gibco™, 10566016 or Sigma-Aldrich®, St. Louis, MO, USA, D0819) supplemented with 10% FBS (Sigma-Aldrich®, F7524), 1% antibiotic/antimycotic (Sigma-Aldrich®, A5955). HT-1080 cells were subcultured routinely before reaching 100% confluence in a ratio of 1:4 or 1:6. The complete culture medium for the MIA PaCa-2 cell line comprised of high glucose DMEM with stable glutamine (Gibco™, 10566016 or Sigma-Aldrich®, D0819) supplemented with 10% FBS (Sigma-Aldrich®, F7524) and 2.5% horse serum (Gibco™, 16050130). MIA PaCa-2 cells were subcultured routinely before reaching 100% confluence in a ratio of 1:5 or 1:6.
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2

Cell Culture Conditions for Cell Lines

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HEp-2 cells (human cervical adenocarcinoma, CCL-23, ATCC), and U-2 OS cells (human bone osteosarcoma, HTB-96, ATCC) were grown in Dulbecco’s Modified Eagle Medium (DMEM, D0819, Sigma-Aldrich) with 10% fetal bovine serum (FBS, F7524, Sigma-Aldrich). PC-3 cells (human prostate adenocarcinoma, CRL-1435, ATCC) were grown in DMEM/F-12 (1:1) (31331–093, Thermo Fisher Scientific) with 7% FBS. CaCo2 cells (human colorectal adenocarcinoma, HTB-37, ATCC) were grown in DMEM with 15% FBS. hTERT-RPE1 cells (retinal pigment epithelia, CRL-4000, ATCC) stably expressing GFP-WDFY2 [22 (link)] was a kind gift from Prof. H. Stenmark, Oslo, and were grown in DMEM/F-12 (1:1) with 10% FBS. All cell lines were maintained in medium supplemented with 100 U/ml penicillin and 100 µg/ml streptomycin (P4333, Sigma-Aldrich) at 37 °C and 5% CO2.
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3

Steatosis Induction in HepG2 Cells

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HepG2 wild-type cells (ATCC, ATCC HB-8065™) were purchased from the genome engineering company Synthego and maintained with RPMI 1640 (R2405, Sigma-Aldrich) supplemented with 10% fetal bovine serum (FBS, F7524, Sigma-Aldrich), 1% P/S (P4333, Sigma-Aldrich). DMEM high glucose (D0819, Sigma-Aldrich) with 10%FBS, 1%P/S media supplemented with 10μg/ml insulin (I9278, Sigma-Aldrich), and 10μM T0901317 (T2320, Sigma-Aldrich) were used to induce DNL steatosis model. HepG2 cells were incubated with SM (steatosis induce media) for one week by 3 days + 2day + 2 days, a total of three times media exchange. Oleic acid (O1257, Sigma-Aldrich) was dissolved into 11%BSA in PBS. 25μM Oleic acid was treated into cell culture media for 6hr to induce the OA steatosis model.
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4

Cell Culture and Starvation Protocols

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Cell lines were grown according to American Type Culture Collection. HeLa and HEK293 cells were maintained in DMEM (D0819; Sigma-Aldrich) supplemented with 10% FCS (F7524; Sigma-Aldrich), 2 mM glutamine (25030-024; Thermo Fisher Scientific), 100 U/ml penicillin, and 100 µg/ml streptomycin at 37°C with 5% CO2. hTERT-RPE-1 cells were grown in DMEM/F12 (31331-028; GIBCO BRL), 10% FCS, and 0.01 mg/ml hygromycin B. For starvation experiments, the growth medium was removed and replaced with EBSS (24010-043; GIBCO BRL). For amino acid stimulation, 1× or 2× amino acids (from 50× amino acid solution; M5550; Sigma-Aldrich) were added to DMEM/F12 or DMEM with or without FCS. The working concentration was for ConA (C9705; Sigma-Aldrich), 100 nM; for Thapsigargin (CAS 67526-95-8; Calbiochem), 100 nM (3 h); for SAR405 (A8883; APEXBIO), 3 µM; for DMSO (D2650; Sigma-Aldrich), 0.1%; and for insulin (I9278; Sigma-Aldrich), 200 nM.
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5

2D and 3D Cell Culture Conditions

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Dulbecco’s modified Eagle’s medium (DMEM, D0819, Sigma); Trypsin-EDTA (BE-17-161E, Lonza); Dulbecco’s Phosphate Buffered Saline (PBS, Ca2+and Mg2+ free, D8537, Sigma-Aldrich); Fetal bovine serum (FBS, F7524, Sigma); Collagen type I, rat tail (08–115; Millipore); Matrigel Growth factor reduced (356,231, Coring); Agar (A1296, Sigma-Aldrich); Sodium bicarbonate (11810–017, Life technologies).
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6

Culturing Human Mast Cell Line HMC-1

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Normal human mast cell line HMC-1 (JCRB0166, BioVector NTCC, Beijing, China) was cultured in Dulbecco's modified Eagle's medium (DMEM; D0819, Sigma-Aldrich, St. Louis, MO) containing 10% foetal bovine serum (FBS; C0227, Beyotime, Shanghai, China) at 37 °C with 5% CO2.
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7

Culturing Human Cancer Cell Lines

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Human neuroblastoma SH-SY5Y was kindly provided by Ms Yilan Zhen and Dr. Kaylene Young (Menzies Institute for Medical Research, University of Tasmania, Australia). Human colorectal adenocarcinoma cells HT-29 were kindly provided by Dr. Anthony Baker (Tasmanian Institute of Agriculture, University of Tasmania and School of Land and Food, Australia). Both cell lines were routinely maintained in Dulbecco’s Modified Eagle’s Medium (DMEM, D0819, Sigma-Aldrich, Sydney, Australia) supplemented with 10% foetal bovine serum (FBS, Bovogen Biologicals, Melbourne, Australia), and 100 U/mL penicillin and 100 mg/mL streptomycin solution in a humidified incubator (5% CO2, 37 °C). SH-SY5Y cells were routinely subcultured at a ratio of 1:30–1:50, and medium changeover occurred approximately every 5 d. HT-29 cells were routinely subcultured at a ratio of 1:3–1:8, and medium changeover occurred approximately every 4 d.
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8

Cell Culture Protocols for IHH, BNL, and HepaRG Cells

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IHH (kindly provided by T. Brunner, University of Konstanz, Konstanz, Germany) were cultured in IMDM (Sigma Aldrich I3390, Buchs, Switzerland), supplemented with 10% FCS, 105 IU/L penicillin-G and 100 mg/L streptomycin and GlutaMAX™ Supplement (Thermo Fisher Scientific, Basel, CH). BNL 1ME A.7R.1 (ATCC® TIB-75™) cells (kind gift of N. Corazza, Bern, Switzerland) were cultured in DMEM (D0819, Sigma-Aldrich, Buchs, Switzerland), supplemented with 10% FCS, 105 IU/L penicillin-G and 100 mg/L streptomycin and 1 mM sodium pyruvate solution (S8636, Sigma Aldrich, Buchs, Switzerland). HepaRG cells (kindly provided by M. Haschke, Bern, Switzerland) were cultured in William’s E medium (Thermo Fisher Scientific, Basel, Switzerland), supplemented with 10% FCS, 105 IU/L penicillin-G and 100 mg/L streptomycin, GlutaMAX™ Supplement, 5 µg/mL bovine insulin (I0516) and 50 µM hydrocortisone hemisuccinate (H2270, Sigma-Aldrich, Buchs, Switzerland).
Primary hepatocytes were isolated as described elsewhere [37 (link)] and cultured in collagen-coated flasks in William’s medium E supplemented with 10% FCS, 100 nM dexamethasone (D4902, Sigma-Aldrich, Buchs, Switzerland), GlutaMAX™ Supplement and 105 IU/L penicillin-G and 100 mg/L streptomycin. All cells were kept in a humidified incubator at 37 °C and 5% CO2.
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9

Cell Culture Conditions for Liver Cancer Cell Lines

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HuH-7 cell line was purchased from the Japanese Collection of Research Bioresources Cell Bank, while Hep3B cell line was purchased from American Type Culture Collection and SK-Hep1 cell line was purchased from The Cell Bank of Type Culture Collection of the Chinese Academy of Sciences. All the cell lines were cultured in DMEM (D0819; Sigma-Aldrich; Merck KGaA) containing 10% FBS (F8192; Sigma-Aldrich; Merck KGaA) and penicillin-streptomycin reagent (V900929; Sigma-Aldrich; Merck KGaA) in 5% CO2 at 37°C.
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10

Cell Culturing and Maintenance Protocol

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HEp-2 cells (ATCC: CCL-23, 1994) and HeLa (Institute Curie, Paris, France, 2002) were grown in a humidified 5% CO2 atmosphere at 37 °C and maintained in Dulbecco’s modified Eagle’s medium with high glucose (DMEM; D0819, Sigma-Aldrich) supplemented with 10% FBS and 100 U/ml penicillin and 100 U/ml streptomycin. Cells were seeded at concentrations of 5 × 104 cells/well in 4 or 24 well plates of type Nunc by ThermoFisher Scientific or Falcon by BD Biosciences (Franklin Lakes, NJ, USA), 3 × 104 cells/well in Nunc Lab-Tek II chambered coverglass dishes (ThermoFisher Scientific) or 1 × 105 cells/well in 35 mm MatTek glass bottom dishes (MatTek Corporation, Ashland, MA, USA) one day prior to experiments. The growth medium was changed to serum-free HEPES-buffered cell growth medium supplemented with Glutamax (cat. no. 35050-061, ThermoFisher Scientific) at the beginning of the experiments, unless stated otherwise.
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