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13 protocols using anti siglecf pe

1

Multiparametric Phenotyping of Lung Immune Cells

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Pleural and Bronchoalveolar cells were preincubated with murine Fc block CD16/CD32 and then stained with the following rat anti-mouse antibodies: anti-F4/80-APC (1:200; eBioscience, clone BM8), anti-SiglecF-PE (1:200, BD Bioscience, clone E50-2440), anti-Ly6G-V450 (1:200, eBioscience, clone 1A8), anti-CD4-PE (1:200; BD Bioscience, clone RM4-5) and anti-CD19-APC (1:200; BD Bioscience, clone 1D3). Macrophages were further analysed using anti-CD169-FITC (1:200, Biolegend, clone 3D6.112) and CD206-PE-Cy7 (1:200, Biolegend clone C068C2). Fluorescence Minus One (FMO) controls were used for each group with a pool of cells of all groups. The samples were run on a FACSVerse flow cytometer (BD Biosciences) and analysed using FACSuite software. Doublets and debris were excluded. CD169 and CD206 expression is expressed as mean fluorescence intensity (MFI) normalized by FMO (MFI-FMO).
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2

Flow Cytometry Analysis of Leukocyte Populations

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PleCs and BAL cells were analyzed. Firstly, red blood cells were lysed by hypotonic shock. The cell suspensions were then centrifuged at 250 g for 8 min at 4°C, diluted in 1 ml PBS with 2% FCS and counted in PBS with 0.04% trypan blue by using a haemocytometer (KOVA Glasstic Slide). Cells were incubated 20 min with CD16/CD32. Proportions of the different leukocyte populations were determined by flow cytometry using the following rat anti-mouse antibodies: anti- F4/80-APC (dilution 1:200; eBioscience, clone BM8), anti-SiglecF-PE (dilution 1:200, BD Bioscience, clone E50-2440) and Ly6G-FITC (dilution 1:200, BD Bioscience, clone 1A8). Flow cytometry acquisition was performed using a FACSVerse flow cytometer running the FACSuite software (BD Biosciences). Doublets and debris were excluded. Analyses were performed with FACSuite software.
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3

Mouse Bone Marrow and Spleen Cell Isolation

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Bone marrow cells were collected from the femurs and tibiae of mice by flushing the opened bones with Iscove’s Modified Dulbecco’s medium (IMDM) as previously described (Dyer et al., 2008 (link)). Spleen cell suspensions in HBSS supplemented with 1% FBS and 10 mM HEPES were prepared as described (Dyer et al., 2011 (link)). Red blood cells were lysed with ACK lysing buffer (Lonza). Live/dead stain (Invitrogen) was added to the cells and non-specific antibody binding to Fc receptors was blocked with anti-mouse CD16/CD32 (BD Biosciences). For analysis of T and B cells, cell suspensions were incubated with anti-CD45-eF450 (eBioscience), anti-CD3-AF700 (eBioscience), anti-CD4-FITC (eBioscience), anti-CD8a-PE (BD), and anti-CD19-AF647 (BD) in phosphate-buffered saline with 0.1% bovine serum albumin (PBS/BSA) at 4°C for 30 min and washed with this buffer prior to analysis. For evaluation of myeloid cells, cell suspensions were incubated with anti-CD45-AF700 (BD), anti-CD11c-AF488 (BD), anti-SiglecF-PE (BD), anti-GR1-V450 (BD) and anti-MHCII-APC (eBioscience). At least 100,000 events were collected on an LSR II flow cytometer (BD Biosciences) and findings were analyzed in FlowJo 9.2.
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4

Multicolor Flow Cytometry of Immune Cells

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Bone marrow and spleen were mashed between two glass slides. Single-cell suspensions were filtered through a 70 µm cell strainer (BD Falcon) and washed twice with PBS/0.5% BSA. To block unspecific binding, cells were incubated with anti-CD16/CD32 (clone 2.4G2; made in-house) for 5 minutes on ice. Subsequently, cells were incubated with FITC labeled anti-B220 (made in-house), CD138PE (BD) and/or anti Siglec-F-PE (BD) for 20 minutes on ice. After washing, analysis was performed by flow cytometry (BD Biosciences LSRII).
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5

Comprehensive Flow Cytometry Analysis of Lung and Lymph Node Immune Cells

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BALF cells recovered were labeled with anti‐CD11c‐APC, anti‐Ly6G‐FITC, anti‐CD11b‐PE‐Cy7 (Biolegend), anti‐CD45‐APC‐Cy7, and anti‐Siglec‐F‐PE (BD Biosciences) for 45 min. MLN cells were isolated. The cell clumps were disaggregated into single‐cell suspensions using nylon mesh (70 μm pore size) filtration, and erythrocytes were lysed with RBC lysis. For detection of Th1, Th2, Th17, and Treg cells, the MLN cells isolated above were stimulated with lymphocyte activator mixture for 5 h and labeled with surface markers anti‐CD4‐V450 (BD Biosciences), anti‐CD4‐FITC (eBioscience), or anti‐CD25‐APC (Biolegend). After washing, fixing, and permeabilizing according to the manufacturer's instructions, cells were labeled intracellularly with anti‐IL‐17A‐PE‐Cy7, anti‐Foxp3‐PE (Biolegend), anti‐IFN‐γ‐APC, and anti‐IL‐13‐PE (Thermo Fisher Scientific), and then were incubated for 45 min. After rinsing, all labeled cells were detected using FCM on the FACScan Flow Analyzer. Data were analyzed with FlowJo software.
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6

Flow Cytometry Analysis of Immune Cells

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Cells obtained from BAL or mediastinal lymph nodes of mice challenged with OVA or sterile saline in vivo were analyzed by flow cytometry (FACSAria II; BD Biosciences PharMingen or FACSCalibur; BD Biosciences PharMingen). We labeled the cells using monoclonal antibodies anti-CD3 (FITC or PECF-594), anti-CD4 (APC or FITC), anti-CD8 (PECy5), anti-SiglecF (PE) (BD Biosciences PharMingen), anti-Ly6G (FITC), anti-CD11c (PE) (Thermo Fisher Scientific, Swedesboro, NJ, USA) or polyclonal antibody anti-GcgR (PE) (Bioss Antibodies, Woburn, MA, USA). To evaluated GcgR expression on Total CD3+ cells, TCD4+ cells, eosinophils, neutrophils, and dendritic cells in BAL, we incubated these cells with primary polyclonal rabbit anti-GcgR (Santa Cruz Biotechnology) antibody for 30 min, washed with PBS, and then we incubated the cells with polyclonal anti-rabbit-Alexa 635 antibody (BD Biosciences PharMingen) for 30 min. In control nonspecific binding, we used an isotype-matched antibodies or the primary polyclonal rabbit antibody anti-GcgR (Santa Cruz Biotechnology) was omitted. The results were analyzed using Summit software version 4.3 (Beckman Coulter.). Gating strategies for identification of populations are shown in Figs S2, S3, S7 and S8.
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7

Activated Macrophage Isolation and Co-culture

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hCD1Tg mice were immunized IT with either BCN or MA-BCN (2.5 μg of MA/mouse). 6 weeks later, lungs were isolated and single-cell suspension was stained with anti-SiglecF-PE (E50-2440, BD Bioscience). SiglecF-positive cells were enriched using an anti-PE MultiSort Kit (Miltenyi Biotec). 1 × 105 flow through and AM-enriched fractions were co-cultured with 1x105 hCD1Tg BMDCs and 3 × 105 DN1 T cells for 48 hr and cells were stained for the expression of activation markers.
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8

Characterization of Lung Cell Populations

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Lung tissue was harvested and single-cell suspensions were prepared as previously described (Garcia-Crespo et al., 2013 (link); Percopo et al., 2014a (link)). Live/Dead stain (Invitrogen) was added to the cells and Ab binding to Fc receptors was blocked with anti-mouse CD16/CD32. For analysis of T and B cells, lung suspensions were stained with anti-CD45-eF450 (eBioscience), anti-CD3-AF700 (eBioscience), anti-CD4-FITC (eBioscience), anti-CD8a-PE (BD), and anti-CD19-AF647 (BD) in PBS with 0.1% BSA at 4 °C for 30 min and washed with this buffer prior to analysis. For myeloid cell analysis, cells were stained with anti-CD45-AF700 (BD), anti-CD11c-AF488 (BD), anti-SiglecF-PE (BD), anti-GR1-V450 (BD) and anti-MHCII-APC (eBioscience). Natural killer cells were characterized by staining with anti-CD45-eF450 (eBioscience), anti-CD3-AF700 (BD), and anti-CD49/DX5-PE (BD). A minimum of 100,000 events were collected on an LSR II flow cytometer (BD Biosciences) and findings were analyzed in FlowJo 9.2.
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9

Isolation and Identification of Intestinal Immune Cells

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Colons were cut into ~1 cm2 pieces, washed in 1X Hank’s Balanced Salt Solution (HBSS) containing 2% heat-inactivated fetal bovine serum (FBS), disrupted by vortexing, further treated with collagenase IV (20 mg/ml) and DNase I (10 mg/mL) in RPMI medium and passed through a 70 μM cell strainer to collect lamina propria cells. Cells were treated with blocking antibodies to CD16/32 (1:100), and stained for viability using Zombie Viability Dye V500 (1:400). Surface staining was done on ice for 20 min using anti-CD45 APC-eFluor780 (1:400, clone 30F11, eBioscience), anti-CD11b APC (1:400, clone M1/70, InVitrogen), anti-Gr1 PerCp-Cy5.5 (1:300, clone RB6-8C5, Biolegend), anti-Siglec F PE (1:400, clone E50-2440, BD), anti-CD3 FITC (1:200, clone 145-2C11, Biolegend), anti-CD49b FITC (1:200, clone DX5, eBioscience), anti-B220 FITC (1:300, clone RA3-6B2, eBioscience), anti-CD4 PerCp-Cy5.5 (1:400, clone RM4-5, eBioscience), and anti-CD8a AlexaFluor 700 (1:200, clone 53–6.7, Biolegend),. Intestinal epithelial cells were collected as described in22 (link). Cells were stained with anti-EpCAM PE-Cy7 (1:400, clone G8.8, eBioscience) and anti-FITC CD44 (1:200, clone IM7, eBioscience). Cells were analyzed on the Fortessa (BD Biosciences) and data analysis was performed on FlowJo (Tree Star).
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10

Identification of Colonic Eosinophils

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Single-cell suspensions of mouse cells were stained using the following antibodies: anti-CD45-APC, anti-CD11b-PerCP-Cy5.5 (obtained from eBioscience, San Diego, CA), anti-Siglec-F-PE (BD Bioscience, San Jose, CA), DAPI (Sigma, St. Louis, MO). Colonic eosinophils were identified as: CD45+/CD11b+/Siglec-F+/SSChigh.
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