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5 protocols using donkey anti rabbit alexa 594

1

Immunofluorescent Staining of Neurons

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Cells at 2 DIV were fixed for 20 min at room temperature in 4% paraformaldehyde and permeabilized for 4 min with 0.12% Triton-X plus 0.12% gelatin in phosphate buffered saline (PBS). Cells were then washed with PBS/gelatin and incubated for 1 h with chicken anti-microtubule associated protein-2 (MAP2) (Abcam, Cat# ab75713, diluted 1:10.000 in PBS/gelatin) and rabbit anti-TAU (Abcam, Cat# ab47568, diluted 1:500 in PBS/gelatin) or goat anti-GFP (Abcam, Cat# ab5450, diluted 1:1000 in PBS/gelatine) to enhance the fluorescence of the transfected cells. After washing in the same buffer, cells were incubated for 1 h at room temperature with Alexa fluor donkey anti chicken (Jackson Immunoresearch, Cat# 703-545-155) and Alexa 594-donkey anti- rabbit (Jackson Immunoresearch, Cat# 711-585-152 diluted 1:1000 in PBS/gelatin). Cell nuclei were stained with DAPI.
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2

Immunohistochemical Analysis of Mouse Brain

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Mice were deeply anesthetized with pentobarbital (200mg/kg s.c., VetOne) and transcardially perfused for 2m with ice-cold phosphate buffered saline (PBS) then for 8 min with ice-cold 4% paraformaldehyde (PFA) at a rate of 5-6ml/min. Brains were prepared as previously described [37] . Primary antibodies used: DsRed (Rabbit, 1:2000, Clontech), VGLUT1 (Guinea Pig, 1:2000, Synaptic Systems), VGLUT2 (Rabbit, 1:1000, Synaptic Systems), ChAT (Goat, 1:200, Millipore).
Secondary antibodies used (5ug/ml, Jackson ImmunoResearch): Alexa488 Donkey Anti-Goat (705-545-147), Alexa 488 Donkey Anti-Guinea Pig (706-545-148), Alexa594 Donkey Anti-Guinea Pig (706-585-148), Alexa 594 Donkey Anti-Rabbit (711-585-152), Alexa647 Donkey Anti-Rabbit (711-605-152), Alexa647 Donkey Anti-Goat (705-605-147). Images were captured using a Zeiss AxioObserver Z1 epifluorescence microscope (10x 0.45NA, 20x 0.75NA, or 63x 1.4NA objective) and Zen software. Densitometry was done with Fiji/ImageJ.
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3

Evaluating Neuronal Activity in DRN

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To assess overall neuronal activity of the DRN immunohistochemical expression of c-Fos was evaluated. The DRN sections were incubated overnight with a primary anti-c-Fos antibody (rabbit polyclonal anti-c-Fos; Abcam; 1:1000). This was followed by incubation for one hour with a secondary antibody (donkey anti-rabbit alexa 594, Jackson immunoresearch Laboratory; 1:200). Eight slices were selected from bregma − 4.16 to − 4.96 and photographed with an Olympus BX51 fluorescence microscope (Olympus, Germany) connected to an Olympus Camera DP72 (Olympus, Germany). All clear c-Fos expressing neurons were counted (FiJi v2.0.0, National Institutes of Health; Maryland).
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4

Immunofluorescent Staining of Tissue Sections

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Sections were air-dried and microwaved for 10 min in 10 mM citrate buffer. 10% donkey serum was used for blocking during staining. Sections were then incubated with diluted primary antibody as described below for 18 hours at 4 °C. Slides were washed 3 times in PBS for 5 min and then incubated with diluted secondary antibody for 1 h at room temperature. Slides were washed in PBS again and mounted in Vectashield medium with DAPI (Vector Laboratories). The primary antibodies used were rabbit anti-TFEB (1:250, Bethyl Laboratories), mouse anti-Ki-67 (1:1000, EBIOSCIENCE), rabbit anti-lysozyme (1:1000, DACO) and rabbit anti-apolipoprotein A1 Antibody (1 ug/ml, Invitrogen). The secondary antibodies used were donkey anti-Rabbit Alexa488 (1:200, Jackson Immunoresearch), donkey anti-Mouse Alexa488 (1:200, Jackson Immunoresearch), and donkey anti-Rabbit Alexa 594 (1:200, Jackson Immunoresearch). Images were collected using a confocal fluorescent microscope (Nikon, Melville, NY).
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5

Immunofluorescence Staining of Flag-TDP-43

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Coverslips were fixed in 1% formaldehyde/PBS, washed with PBS, permeabilized in 0.1% TritonTM X-100/PBS and blocked in 0.1% bovine serum albumin (BSA)/PBS. Coverslips were incubated with primary antibodies: mouse anti-Flag (F1804; Sigma) and rabbit anti-TDP-43 (10789-2-AP; Proteintech) diluted in 0.1% BSA/PBS; washed once with 0.1% TritonTM X-100/PBS and then twice with 0.1% BSA/PBS. Coverslips were then incubated with secondary antibodies: donkey anti-mouse Alexa 488 (Jackson Immunoresearch) and donkey anti-rabbit Alexa 594 (Jackson Immunoresearch) diluted in 0.1% BSA/PBS, washed, labelled with TO-PROTM-3 iodide (ThermoFisher Scientific) and mounted using ProLongTM Antifade (ThermoFisher Scientific). Images were collected on a Leica TCS SP5 confocal microscope equipped with 40× (1.25 numerical aperture) oil objective and the Leica Application Suite imaging software.
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