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Q exactive gc

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Q Exactive GC is a high-performance mass spectrometer designed for accurate and reliable analysis of a wide range of chemical compounds. It combines gas chromatography (GC) with Orbitrap mass spectrometry technology, providing high-resolution, accurate-mass measurements for identification and quantification of analytes.

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7 protocols using q exactive gc

1

Comprehensive Volatile Profiling of Samples

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Each sample (5 g) was chopped and put into a headspace vial with a 20 mL capacity and then placed in a robotic arm TriPlus RSH (CTC Analytics, Basel, Switzerland) autosampler incubation chamber and heated at 40 °C for 10 min for volatile compound enrichment. The extraction was performed using a headspace solid-phase microextraction (HS-SPME) extraction needle (50/30 μm DVB/CAR/PDMS Supelco, MA, USA) for 20 min. Using the GC-Orbitrap-MS system (Q Exactive GC, Thermo Fisher, MA, USA), the volatile chemicals were examined on a TG-5 column (0.25 × 0.25 × 0.32, 30 m, Fisher Scientific, MA, USA).
The GC-MS started out at 40 °C for 2 min and was then raised to 250 °C at a rate of 8 °C/min and held for 2 min, for a total running cycle of 32 min. The MS was run in positive electron impact ionization EI+ mode with a solvent delay for the first 0.5 min, scanning from ion mass fragments 35–475 m/z, an interscan delay of 0.1 s, and a resolution of 60,000 at FWHM (Full Width at Half Maximum). The carrier gas was helium of 99.996% purity (Shandong, China). The velocity of the helium gas was set at 1.2 mL/min.
For the retention times and retention index of volatile flavor compounds, we relied on computer matching with the reference of the MS library of NIST 14.0 (mass-spectral similarity match ≥ 80). By computing the percentages of GC peak regions, the compounds were given a numerical value.
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2

Comprehensive GC-MS Metabolite Profiling

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GC-MS setup: GC-MS analysis was performed using a hybrid quadrupole-Orbitrap GC-MS/MS system (Q Exactive GC, ThermoFisher). The sample volume injected was 1 μL at a carrier gas flow rate of 1 mL/min of helium. The oven temperature was initially set to 50°C and held for 1 min, ramped up to 100°C at 10°C/min, and immediately ramped up to 200°C at 10°C/min and held for 1 min, then ramped up to 320°C at 10°C/min. The ion source temperature was set to 230°C. The scan range was 50.0 to 650.0 m/z, and the mass spectrum was acquired in electron ionization mode (70 eV).
The raw data from the GC-MS analysis were converted to ABF (Analysis Base File) format using analysis base file converter software, and peak detection, deconvolution, alignment, and filtering were performed to identify the metabolites based on the LUG database ((Untargeted database of GC–MS from Lumingbio)), removing all internal standards and false positive peaks. The raw data matrix of the sample information, retention times, and peak intensities was then exported to an Excel file for further analysis.
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3

GC-FID and GC-HRMS Analysis of Compounds

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The GC-FID system used was 7890A GC (Agilent, Palo Alto, CA, USA) using a HP-5MS (30 m × 0.25 mm × 0.25 μm) column. The temperature gradient was set to 40°C, held for 2 min, increased linearly at 10°C/min until 320°C, and held for 5 min. The injections were 1 μL with a 1:20 split. The GC-HRMS system used was a QExactive GC (ThermoFisher, San Jose, CA, USA) set to acquire 30–550 m/z using a DB-5MS (30 m × 0.25 mm × 0.25 μm) column. The temperature gradient was set to 50°C, held for 2 min, increased linearly at 10°C/min until 300°C, and held for 3 min. The injections were 1 μL with a 1:10 split. The CI gas used was methane.
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4

GC-MS Analysis of Organic Compounds

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GC/MS measurements were performed with a Q Exactive GC (Thermo Fisher, Bremen, Germany), consisting of a AI/AS 1310 autosampler equipped TRACE 1300 series GC coupled to a Q Exactive Orbitrap MS. The injection volume of an individual sample was 0.2 μL and dichloromethane was used as injector cleaning solvent. The sample injector was operated at 300°C and split mode was selected with a split flow of 80 mL min−1, and a purge flow of 5 mL min-1. High purity helium (N5.0) was used as a carrier gas at a constant flow rate of 1.2 mL min-1. The GC separation was carried out on a RTX@-1ms capillary column (30 m × 0.25 mm ID, 0.25 um). The temperature program was performed with a starting temperature of 35°C, which was increased to a final temperature of 320°C at a heating rate of 10°C min−1 and then held at 320°C for additional 5 min. Transfer line temperature was set to 320°C. The eluted compounds from GC were ionized by EI at an electron energy of 70 eV. The mass spectra were recorded in full scan mode with a mass range of 30–600 Da at a mass resolution of 120,000 (FWHM at m/z 200). Collected GC-MS data were imported and characterized against NIST and our own MPI libraries by using the MassLib software package (MSP Kofel, Zollikofen, Switzerland).
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5

Quantitative Analysis of C3F8 Gas

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The GC-MS is carried out on Q Exactive GC (Thermofisher). Gas chromatographic conditions are as follows: the column is HP-VOC (30 m × 0.32 mm × 1.8 μm); the carrier gas is helium; the column flow rate is 1.2 mL min−1; the column temperature program: the initial temperature is 40 °C and keeps for 5 min, then the temperature rises at the rate of 15 °C min−1 until the temperature raised to 230 °C and keeps for 5 min. Mass spectrometry conditions are as follows: EI ionization source, doubling voltage 1600 V; selected ions: m/z (mass ratio) 69, 169. The operation steps are as follows: 3 mL of the prepared microbubble suspension (or 100 μL C3F8, corresponding to the gas content in the commercial microbubble) is accurately aspirated, then injected into a gas bag containing 500 mL high-purity nitrogen, and incubated for 24 hours in a water bath (37 °C) to completely rupture the microbubbles to release C3F8 gas. 50 μL of the above gas is subjected to analysis, with high purity nitrogen as a control.
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6

Metabolomics Analysis of Leukemia Cells

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A total number of 1 × 106 leukemia cells and MDSC were isolated by FACS. Purified cells were subsequently extracted and analyzed on gas chromatography‐MS (GC‐MS, Thermo, Q Exactive GC). The data were performed feature extraction and preprocessed with Xcalibur 4.3 software (Thermo), and then normalized and edited into a two‐dimensional data matrix by excel 2010 software, including retention time (RT), compound molecular weight (compMW), observations (samples), and peak intensity.
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7

GC-Orbitrap MS Analysis of Water Concentrates

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A total of six water concentrates were analyzed by means of GC Orbitrap based MS.
The Q Exactive™ GC was coupled to a Trace™ 1300 GC (Thermo Scientific). A volume of 1 µL of the DBP mixture extract was injected in splitless mode using a TriPlus™ RSH injector (Thermo Scientific) with a splitless time of 1 min. The injector temperature was set at 280ºC. In order to increase the resolution of chromatographic peaks, the GC separation of extracted components was carried out on a Thermo Scientific TR-5MS column, 60 m x 0.25 mm (I.D.) x 0.25 µm (film thickness) using helium as carrier gas at a constant flow of 1.2 mL/min and the following GC temperature program: initial temperature of 40ºC held for one min, increased at a rate of 15ºC/min to 325ºC and held for 10 min. The GC was interfaced with the Q Exactive GC instrument via a transfer line heated at 280ºC. The source temperature was set at 250ºC. MS analyses were performed using electron ionization (EI) at 70 eV in full-scan mode using a scan range of m/z 50-650 and a resolution of 60,000 (full width at half-maximum [FWHM] at m/z 200).
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