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22 protocols using auy922

1

Cell Culture Protocols for Cancer Research

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U2OS cells (American Type Culture Collection, ATCC) were maintained in McCoy’s 5A medium supplemented with 10% fetal bovine serum. MCF-10A cells (ATCC) were cultured in mammary epithelial growth medium containing insulin, hydrocortisone, epidermal growth factor, and bovine pituitary extract (Clonetics). EVSAT cells (Creative Bioarray, NY, USA) were cultured in MEM containing 10% fetal bovine serum. MDA-MB-436 cells (ATCC) were maintained in DMEM medium supplemented with 10% fetal bovine serum. PC3, DU145, ACHN, 786-0, H226, H522, OVCAR-3, OVCAR-8, and MCF7 cells were all obtained from ATCC and maintained according to ATCC instructions. BRCA1 (D-9) monoclonal and TTK polyclonal antibodies were purchased from Santa Cruz (SC-6954, 1:1000) and Cell Signaling (#3255, 1:1000), respectively. ZNF668 antibodies were generated as previously described41 (link). Uncropped scans of the most important western blots are listed as supplementary figures in Supplementary Figure 13. PI3K inhibitor LY-294002 and mTOR inhibitor rapamycin were purchased from Sigma. PARP inhibitors olaparib and rucaparib, HDAC inhibitor vorinostat and Hsp90 inhibitor AUY922 were from Selleckchem. TTK inhibitor AZ3146 was purchased from R&D Systems.
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2

Cell Culture Protocols for ALK-rearranged Lung Cancer

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The H2228 cell line was obtained from the American Type Culture Collection (Rockville, MD), and the H3122 cell line was a gift from Adi F. Gazdar (UT Southwestern, Dallas, TX). Cells were cultured in 10% fetal bovine serum (FBS), 100-U/mL penicillin, and 100-mg/mL streptomycin (Invitrogen, Carlsbad, CA) at 37°C in an atmosphere with 5% CO2. Crizotinib, TAE684, ceritinib, alectinib, gefitinib, afatinib, PHA 665752, and AUY922 were purchased from Selleck Chemicals (Houston, TX). EGF and IGF-1 were purchased from Calbiochem and Sigma–Aldrich (St. Louis, MO), respectively. BI 836845 was kindly provided by Boehringer Ingelheim (Vienna, Austria).
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Hsp90 Inhibitors and Cell Lines

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The Hsp90 inhibitors SNX-2112 (S2639, >99%) AUY922 (S1069, 99%) ganetespib (S1159, >99%) were purchased from Selleck Chemicals. Geldanamycin (ant-gl-5, >95%) was purchased from Invivogen. Fluconazole was obtained from Sequoia Research Products (SRP01025f, >99%) and Cy3B-Mono NHS ester was purchased from GE Healthcare UK Ltd (PA63101, >95%). The cell lines HEPG2 (HB-8065), Raw264.5 (TIB-71), 293T (CRL-3216), and 3T3 (NIH/3T3; CRL-1658) were obtained from the American Type Culture Collection (ATCC) and grown in DMEM supplemented with 10% fetal bovine serum at 37 °C under 5% CO2. Cultures were confirmed negative for mycoplasma contamination by monthly surveillance testing using a PCR-based kit.
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4

Cell Viability Assay with Small Molecule Inhibitors

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Small molecule inhibitors were purchased from Tocris Biosciences (R&D Systems): PF-4708671, U 73122, GSK2334470, IPA3, SL0101-1 and XMD 8-92 or from Selleck Chemicals LLC (TX, USA): PF-562271, Enzastaurin (LY317615), AUY922 (NVP-AUY922), 17-AAG (Geldanamycin), PF-04929113 (SNX-5422), AZD6244 (Selumetinib), AT7867, CHIR-98014, LY2228820, BIX 02188, AS703026, PH-797804, SP600125, NU7441. All inhibitors were prepaed in DMSO at 100 mM. Cells were treated with inhibitors prepared in culture media where the final concentration of DMSO was 2% v/v. Vehicle control treatments consisted of culture media containing 2% v/v DMSO. Six days after treatment, cell survival was measured in comparison to vehicle controls using the CellTiter 96® Assay as per manufacturer instructions (MTS assay, Promega Corporation, WI, USA). Data were analyzed in GraphPad Prism® version 5.00 for Windows (GraphPad Software, CA, USA) to measure the log10 of IC50 for each drug. For combination assays, drugs were added simultaneously. Heatmaps for sensitivities (-log10 of IC50) were prepared using D-chip Analyzer software [49 (link)].
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5

In Vivo TNBC Tumor Model

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The local animal ethics committee gave approval for use of the mice. Female balb/c nude mice at 5 weeks of age (Animal Resources Centre, WA, Australia) were inoculated in the mammary fat-pads with exponentially growing MDA-MB-231 TNBC cells (5×106 per fat pad) in 50 µL of 50:50 PBS:Matrigel™ (BD Biosciences, CA, USA). Treatments started when tumors were 50 ± 1 mm3 as calculated from caliper measurement of tumor's longest (a) and shortest (b) diameters: tumor volume (mm3) = a/2 × b2. Docetaxel, doxorubicin and the Hsp90 inhibitor AUY922 were purchased from Selleck Chemicals and the Erk5 inhibitor XMD 8-92 from Tocris Biosciences. All drugs were diluted in 5% solution of D-glucose in PBS for intraperitoneal injection. Doses and schedule of treatments are detailed in Figure legends. Mice were monitored for change in weight and other toxicity indications and none were observed. Tumor growth was monitored by caliper measurements to calculate the change in tumor volume compared to day 0. Six tumors were excised on day 13 to perform ex vivo studies as below.
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6

Comprehensive Kinase Inhibitor Protocol

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AT9283, AZD4547, AZD6244, BGJ398, crizotinib, pictilisib, ibrutinib, PD173074, ruxolitinib, TAE684, and gandotinib were all purchased from Selleck Chemicals, AUY922, dovitinib, everolimus, gefitinib, mubritinib, saracatinib, sunitinib, and ZSTK474 were from LC Laboratories, CH5424802 was from Active Biochem, SB525334 was from Tocris, and fedratinib was from Axon Medchem. The human gastric cancer cell line SNU-16 was obtained from ATCC and was cultured in RPMI 1640 medium supplemented with 10 % fetal bovine serum according to the manufacturer’s instructions.
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7

Evaluating HSP90 Inhibitors in Schwann and DRG Cells

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HSP90 inhibitor
compounds, including AT13387 (S1163), AUY922 (S1069), BIIB021 (S1175),
SNX5422 (S2656), and STA9090 (S1159), were purchased from Selleckchem
(Houston, TX) and stored at a stock concentration of 1 mM in DMSO.
Primary Schwann cells were treated with HSP90 inhibitors at the indicated
concentrations in complete media (see above), 24 h after seeding.
DMSO served as the vehicle control while geldanamycin (GA) was used
as a positive control for heat shock pathway activation. The DRG explant
cultures were maintained for 7 days in ascorbate-containing media
prior to treatment with either DMSO, AUY922 (100 nM), or BIIB021 (100
nM), every third day (72 h apart). Cultures were procured, 24 h after
the third treatment, for either biochemical or immunochemical analyses.15 (link)
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8

Cell Culture Protocols for Cancer Research

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U2OS cells (American Type Culture Collection, ATCC) were maintained in McCoy’s 5A medium supplemented with 10% fetal bovine serum. MCF-10A cells (ATCC) were cultured in mammary epithelial growth medium containing insulin, hydrocortisone, epidermal growth factor, and bovine pituitary extract (Clonetics). EVSAT cells (Creative Bioarray, NY, USA) were cultured in MEM containing 10% fetal bovine serum. MDA-MB-436 cells (ATCC) were maintained in DMEM medium supplemented with 10% fetal bovine serum. PC3, DU145, ACHN, 786-0, H226, H522, OVCAR-3, OVCAR-8, and MCF7 cells were all obtained from ATCC and maintained according to ATCC instructions. BRCA1 (D-9) monoclonal and TTK polyclonal antibodies were purchased from Santa Cruz (SC-6954, 1:1000) and Cell Signaling (#3255, 1:1000), respectively. ZNF668 antibodies were generated as previously described41 (link). Uncropped scans of the most important western blots are listed as supplementary figures in Supplementary Figure 13. PI3K inhibitor LY-294002 and mTOR inhibitor rapamycin were purchased from Sigma. PARP inhibitors olaparib and rucaparib, HDAC inhibitor vorinostat and Hsp90 inhibitor AUY922 were from Selleckchem. TTK inhibitor AZ3146 was purchased from R&D Systems.
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9

Investigating Signaling Pathways in Cancer

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17‐Allyl‐amino‐demethoxy‐geldanamycin (17‐AAG) was obtained from the National Cancer Institute (Bethesda, MD, USA). AUY‐922 was purchased from Selleckchem (Houston, TX, USA). P53 siRNA (sc‐29435), PAK siRNA (sc‐29700), P190RHOGAP siRNA (sc‐44077), PDXP siRNA (sc‐61425), control siRNA (sc‐37007) and MDM2 antibody (sc‐965) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). p53 (9282s), p‐myosin light‐chain 2, cofilin (3318), phospho‐cofilin (3311), PAK1 (2602), LIMK1 (3842) and phospho‐LIMK1 (3841) antibodies were obtained from Cell Signaling (Danvers, MA, USA). Β‐actin antibody (P8999) and CelyticM lysis reagent (C2978) were purchased from Sigma‐Aldrich (St Louis, MO, USA). Secondary mouse and rabbit antibodies were purchased from Licor (Lincoln, NE, USA). Oligofectamine (12252011), Pierce BCA protein assay and nitrocellulose membranes were obtained from Fisher Scientific (Pittsburgh, PA, USA). Ad‐p53‐GFP (1260) and ad‐GFP (1060) were obtained from Vector Biolabs (Malvern, PA USA).
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10

Biopharmaceutical Agents in Cancer Research

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IVIgG and rituximab (RTX) were from The University of Texas MD Anderson Cancer Center Pharmacy (Houston, TX), and IVIgG was dialyzed against phosphate-buffered saline (PBS) to remove L-proline. AUY922, bortezomib (BZB), and carfilzomib (CFZ) were from Selleck Chemicals (Houston, TX), recombinant human HSP70-1 protein was from StressMarq Biosciences (British Columbia, Canada), and bovine serum albumin (BSA) was from Sigma-Aldrich (St. Louis, MO).
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